Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 INO80E-210ENST00000567705 880 ntTSL 3 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 BANP-204ENST00000393208 2283 ntTSL 2 BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 GPX1P2-201ENST00000429271 606 ntBASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 KRT8P48-201ENST00000515599 1220 ntBASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 AC005829.1-201ENST00000570002 483 ntBASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 ELL2P1-201ENST00000413990 1906 ntBASIC21.06■□□□□ 0.96
SMC4Q9NTJ3 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 AL592424.1-201ENST00000563624 1536 ntBASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 ACTG1P14-201ENST00000446382 1122 ntBASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 TIMM8BP1-201ENST00000452384 211 ntBASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 FAM86C2P-203ENST00000528684 1004 ntBASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 AC243562.1-201ENST00000560672 389 ntBASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 AC026691.1-201ENST00000602502 2017 ntBASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 U82695.1-201ENST00000635752 1889 ntBASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 PGR-209ENST00000617858 2816 ntTSL 5 BASIC21.05■□□□□ 0.96
SMC4Q9NTJ3 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms