Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.08■□□□□ 0.01
RFC3P40938 AL391256.1-201ENST00000443260 1855 ntBASIC15.08■□□□□ 0.01
RFC3P40938 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.08■□□□□ 0.01
RFC3P40938 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.08■□□□□ 0
RFC3P40938 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
RFC3P40938 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.08■□□□□ 0
RFC3P40938 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.08■□□□□ 0
RFC3P40938 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.08■□□□□ 0
RFC3P40938 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
RFC3P40938 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.08■□□□□ 0
RFC3P40938 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 TREML5P-201ENST00000421694 576 ntBASIC15.08■□□□□ 0
RFC3P40938 AC107890.1-201ENST00000422478 521 ntBASIC15.08■□□□□ 0
RFC3P40938 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.08■□□□□ 0
RFC3P40938 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.08■□□□□ 0
RFC3P40938 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.08■□□□□ 0
RFC3P40938 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 IGHV3-42-201ENST00000520410 361 ntBASIC15.08■□□□□ 0
RFC3P40938 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
RFC3P40938 AC051619.7-201ENST00000568314 623 ntBASIC15.08■□□□□ 0
RFC3P40938 MIR3197-201ENST00000582241 73 ntBASIC15.08■□□□□ 0
RFC3P40938 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.08■□□□□ 0
RFC3P40938 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.08■□□□□ 0
RFC3P40938 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.08■□□□□ 0
RFC3P40938 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.08■□□□□ 0
RFC3P40938 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.08■□□□□ 0
RFC3P40938 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.08■□□□□ 0
RFC3P40938 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.08■□□□□ 0
RFC3P40938 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 AL645728.1-201ENST00000366221 2101 ntBASIC15.08■□□□□ 0
RFC3P40938 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.08■□□□□ 0
RFC3P40938 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
RFC3P40938 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 FO538757.1-201ENST00000623083 1397 ntBASIC15.08■□□□□ 0
RFC3P40938 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 AC079328.2-201ENST00000561241 3354 ntBASIC15.08■□□□□ 0
RFC3P40938 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.08■□□□□ 0
RFC3P40938 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.08■□□□□ 0
RFC3P40938 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.07■□□□□ 0
RFC3P40938 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.07■□□□□ 0
RFC3P40938 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.07■□□□□ 0
RFC3P40938 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.07■□□□□ 0
RFC3P40938 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.07■□□□□ 0
RFC3P40938 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
RFC3P40938 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.07■□□□□ 0
RFC3P40938 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
RFC3P40938 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.07■□□□□ 0
RFC3P40938 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.07■□□□□ 0
RFC3P40938 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.07■□□□□ 0
RFC3P40938 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.07■□□□□ 0
RFC3P40938 AL512356.2-201ENST00000546955 174 ntBASIC15.07■□□□□ 0
RFC3P40938 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.07■□□□□ 0
RFC3P40938 MIR4453-201ENST00000584019 89 ntBASIC15.07■□□□□ 0
RFC3P40938 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.07■□□□□ 0
RFC3P40938 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.07■□□□□ 0
RFC3P40938 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
RFC3P40938 AC005915.1-201ENST00000624912 2018 ntBASIC15.07■□□□□ 0
RFC3P40938 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
RFC3P40938 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.07■□□□□ 0
RFC3P40938 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.06■□□□□ 0
RFC3P40938 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms