Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
COL6A3P12111 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC16.76■□□□□ 0.27
COL6A3P12111 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.76■□□□□ 0.27
COL6A3P12111 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC16.76■□□□□ 0.27
COL6A3P12111 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
COL6A3P12111 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC16.76■□□□□ 0.27
COL6A3P12111 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A3P12111 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
COL6A3P12111 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
COL6A3P12111 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A3P12111 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A3P12111 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC16.76■□□□□ 0.27
COL6A3P12111 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A3P12111 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.76■□□□□ 0.27
COL6A3P12111 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A3P12111 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.76■□□□□ 0.27
COL6A3P12111 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A3P12111 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A3P12111 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.76■□□□□ 0.27
COL6A3P12111 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.75■□□□□ 0.27
COL6A3P12111 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
COL6A3P12111 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A3P12111 NAGK-204ENST00000443872 878 ntTSL 3 BASIC16.75■□□□□ 0.27
COL6A3P12111 AC012158.2-201ENST00000536546 354 ntBASIC16.75■□□□□ 0.27
COL6A3P12111 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC16.75■□□□□ 0.27
COL6A3P12111 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC16.75■□□□□ 0.27
COL6A3P12111 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.75■□□□□ 0.27
COL6A3P12111 AL139327.4-201ENST00000612362 153 ntBASIC16.75■□□□□ 0.27
COL6A3P12111 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A3P12111 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC16.75■□□□□ 0.27
COL6A3P12111 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC16.75■□□□□ 0.27
COL6A3P12111 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
COL6A3P12111 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A3P12111 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A3P12111 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.75■□□□□ 0.27
COL6A3P12111 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.75■□□□□ 0.27
COL6A3P12111 RNF41-210ENST00000552244 716 ntTSL 3 BASIC16.75■□□□□ 0.27
COL6A3P12111 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A3P12111 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.75■□□□□ 0.27
COL6A3P12111 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A3P12111 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A3P12111 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
COL6A3P12111 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A3P12111 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
COL6A3P12111 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A3P12111 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.75■□□□□ 0.27
COL6A3P12111 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
COL6A3P12111 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.75■□□□□ 0.27
COL6A3P12111 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.74■□□□□ 0.27
COL6A3P12111 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A3P12111 LINC00304-203ENST00000565008 1864 ntBASIC16.74■□□□□ 0.27
COL6A3P12111 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC16.74■□□□□ 0.27
COL6A3P12111 MIR1202-201ENST00000408529 83 ntBASIC16.74■□□□□ 0.27
COL6A3P12111 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A3P12111 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.74■□□□□ 0.27
COL6A3P12111 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
COL6A3P12111 IGLV3-15-201ENST00000518356 244 ntBASIC16.74■□□□□ 0.27
COL6A3P12111 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A3P12111 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC16.74■□□□□ 0.27
COL6A3P12111 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.74■□□□□ 0.27
COL6A3P12111 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
COL6A3P12111 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A3P12111 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A3P12111 AL355312.1-201ENST00000407115 2176 ntBASIC16.74■□□□□ 0.27
COL6A3P12111 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A3P12111 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
COL6A3P12111 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A3P12111 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC16.74■□□□□ 0.27
COL6A3P12111 SMS-201ENST00000379404 1174 ntTSL 3 BASIC16.74■□□□□ 0.27
COL6A3P12111 DDX39AP1-201ENST00000445147 1181 ntBASIC16.74■□□□□ 0.27
COL6A3P12111 AC026410.1-201ENST00000507366 1101 ntBASIC16.74■□□□□ 0.27
COL6A3P12111 AC087045.2-201ENST00000606279 1003 ntBASIC16.74■□□□□ 0.27
COL6A3P12111 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A3P12111 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.74■□□□□ 0.27
COL6A3P12111 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A3P12111 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.74■□□□□ 0.27
COL6A3P12111 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A3P12111 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A3P12111 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A3P12111 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
COL6A3P12111 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC16.73■□□□□ 0.27
COL6A3P12111 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
COL6A3P12111 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
COL6A3P12111 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A3P12111 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC16.73■□□□□ 0.27
COL6A3P12111 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A3P12111 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A3P12111 AC108860.2-201ENST00000562760 2183 ntBASIC16.73■□□□□ 0.27
COL6A3P12111 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A3P12111 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A3P12111 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A3P12111 AL023775.1-201ENST00000454907 1746 ntBASIC16.73■□□□□ 0.27
COL6A3P12111 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.73■□□□□ 0.27
COL6A3P12111 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A3P12111 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
COL6A3P12111 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A3P12111 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
COL6A3P12111 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A3P12111 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC16.73■□□□□ 0.27
COL6A3P12111 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms