Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
MSH4O15457 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH4O15457 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH4O15457 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
MSH4O15457 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MSH4O15457 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
MSH4O15457 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.38■□□□□ 0.53
MSH4O15457 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.38■□□□□ 0.53
MSH4O15457 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH4O15457 AC067863.1-201ENST00000494933 530 ntBASIC18.38■□□□□ 0.53
MSH4O15457 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.38■□□□□ 0.53
MSH4O15457 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.38■□□□□ 0.53
MSH4O15457 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH4O15457 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.38■□□□□ 0.53
MSH4O15457 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH4O15457 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.38■□□□□ 0.53
MSH4O15457 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH4O15457 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
MSH4O15457 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MSH4O15457 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.38■□□□□ 0.53
MSH4O15457 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.38■□□□□ 0.53
MSH4O15457 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.38■□□□□ 0.53
MSH4O15457 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MSH4O15457 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH4O15457 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
MSH4O15457 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH4O15457 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH4O15457 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
MSH4O15457 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH4O15457 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC18.38■□□□□ 0.53
MSH4O15457 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC18.37■□□□□ 0.53
MSH4O15457 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC18.37■□□□□ 0.53
MSH4O15457 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH4O15457 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH4O15457 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
MSH4O15457 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
MSH4O15457 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH4O15457 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH4O15457 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
MSH4O15457 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH4O15457 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.37■□□□□ 0.53
MSH4O15457 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC18.37■□□□□ 0.53
MSH4O15457 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH4O15457 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.37■□□□□ 0.53
MSH4O15457 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MSH4O15457 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MSH4O15457 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.37■□□□□ 0.53
MSH4O15457 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.37■□□□□ 0.53
MSH4O15457 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC18.37■□□□□ 0.53
MSH4O15457 MIR4321-201ENST00000592276 80 ntBASIC18.37■□□□□ 0.53
MSH4O15457 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.37■□□□□ 0.53
MSH4O15457 COQ4-205ENST00000609948 956 ntTSL 2 BASIC18.37■□□□□ 0.53
MSH4O15457 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.37■□□□□ 0.53
MSH4O15457 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.37■□□□□ 0.53
MSH4O15457 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC18.37■□□□□ 0.53
MSH4O15457 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.37■□□□□ 0.53
MSH4O15457 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH4O15457 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
MSH4O15457 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MSH4O15457 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
MSH4O15457 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH4O15457 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MSH4O15457 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH4O15457 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.37■□□□□ 0.53
MSH4O15457 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MSH4O15457 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH4O15457 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MSH4O15457 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.37■□□□□ 0.53
MSH4O15457 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.37■□□□□ 0.53
MSH4O15457 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
MSH4O15457 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
MSH4O15457 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.37■□□□□ 0.53
MSH4O15457 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSH4O15457 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.36■□□□□ 0.53
MSH4O15457 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18.36■□□□□ 0.53
MSH4O15457 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH4O15457 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH4O15457 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH4O15457 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSH4O15457 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSH4O15457 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
MSH4O15457 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
MSH4O15457 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
MSH4O15457 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.36■□□□□ 0.53
MSH4O15457 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH4O15457 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.36■□□□□ 0.53
MSH4O15457 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.36■□□□□ 0.53
MSH4O15457 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.36■□□□□ 0.53
MSH4O15457 AC125807.1-201ENST00000483097 614 ntBASIC18.36■□□□□ 0.53
MSH4O15457 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC18.36■□□□□ 0.53
MSH4O15457 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSH4O15457 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC18.36■□□□□ 0.53
MSH4O15457 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.36■□□□□ 0.53
MSH4O15457 AL365330.1-201ENST00000607459 531 ntBASIC18.36■□□□□ 0.53
MSH4O15457 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH4O15457 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSH4O15457 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.36■□□□□ 0.53
MSH4O15457 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH4O15457 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH4O15457 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms