Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.33
AP4E1Q9UPM8 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
AP4E1Q9UPM8 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
AP4E1Q9UPM8 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
AP4E1Q9UPM8 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
AP4E1Q9UPM8 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
AP4E1Q9UPM8 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
AP4E1Q9UPM8 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.08■□□□□ 0.33
AP4E1Q9UPM8 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.08■□□□□ 0.33
AP4E1Q9UPM8 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
AP4E1Q9UPM8 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 MCCD1P2-201ENST00000423228 335 ntBASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 AC004832.2-201ENST00000426397 482 ntBASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 AL391005.1-201ENST00000623953 2435 ntBASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
AP4E1Q9UPM8 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 AC018695.7-201ENST00000624587 2492 ntBASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 RARRES2P8-201ENST00000566335 367 ntBASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 AC026691.1-201ENST00000602502 2017 ntBASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
AP4E1Q9UPM8 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 AL596087.1-201ENST00000400979 1969 ntBASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms