Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 AC015967.2-201ENST00000624092 234 ntBASIC11.26□□□□□ -0.61
CSMD3Q7Z407 AC006435.4-201ENST00000625037 234 ntBASIC11.26□□□□□ -0.61
CSMD3Q7Z407 AL356737.1-201ENST00000634391 234 ntBASIC11.26□□□□□ -0.61
CSMD3Q7Z407 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 AL512652.2-201ENST00000625156 1716 ntBASIC11.26□□□□□ -0.61
CSMD3Q7Z407 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 CNN2P8-201ENST00000421872 913 ntBASIC11.26□□□□□ -0.61
CSMD3Q7Z407 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 PFN2-215ENST00000497148 743 ntTSL 4 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 UBALD1-205ENST00000590891 2641 ntBASIC11.26□□□□□ -0.61
CSMD3Q7Z407 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
CSMD3Q7Z407 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 DEK-201ENST00000244776 1441 ntTSL 2 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 RN7SL560P-201ENST00000577943 264 ntBASIC11.25□□□□□ -0.61
CSMD3Q7Z407 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 RN7SL399P-201ENST00000471648 279 ntBASIC11.25□□□□□ -0.61
CSMD3Q7Z407 NEU3-202ENST00000526068 431 ntTSL 2 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 MIR4706-201ENST00000582134 82 ntBASIC11.25□□□□□ -0.61
CSMD3Q7Z407 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 APOA1-205ENST00000375329 927 ntTSL 2 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 AC026954.1-201ENST00000429771 1293 ntBASIC11.25□□□□□ -0.61
CSMD3Q7Z407 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 AC005702.4-201ENST00000618393 416 ntBASIC11.25□□□□□ -0.61
CSMD3Q7Z407 LOX-206ENST00000639739 1626 ntTSL 5 BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CSMD3Q7Z407 AL603756.1-201ENST00000606511 2163 ntBASIC11.24□□□□□ -0.61
CSMD3Q7Z407 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms