Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 CALY-203ENST00000368558 825 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 MTND6P24-201ENST00000440466 518 ntBASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 AL133215.2-201ENST00000609242 977 ntBASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC60Q8IWA6 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 AC020916.1-201ENST00000587762 1774 ntBASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 MIR661-201ENST00000384842 89 ntBASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 TSSK5P-201ENST00000423978 907 ntBASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 AC241585.1-201ENST00000433527 519 ntBASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 HLA-V-204ENST00000476601 1289 ntBASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 AC004890.2-204ENST00000481968 304 ntBASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 MIR4745-201ENST00000577608 62 ntBASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 AL590560.3-201ENST00000623350 461 ntBASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC60Q8IWA6 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.22■□□□□ 0.51
CCDC60Q8IWA6 AC024267.1-201ENST00000582320 895 ntBASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms