Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 PMS2P4-201ENST00000412466 1052 ntBASIC19.9■□□□□ 0.78
VPS53Q5VIR6 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 IGHV3OR16-6-201ENST00000568775 360 ntBASIC19.9■□□□□ 0.78
VPS53Q5VIR6 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 AC092364.2-201ENST00000596710 2692 ntBASIC19.9■□□□□ 0.78
VPS53Q5VIR6 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 AC016027.1-202ENST00000607927 1699 ntBASIC19.9■□□□□ 0.78
VPS53Q5VIR6 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS53Q5VIR6 PCDH8P1-201ENST00000428983 2773 ntBASIC19.89■□□□□ 0.78
VPS53Q5VIR6 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
VPS53Q5VIR6 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
VPS53Q5VIR6 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 AL391005.1-201ENST00000623953 2435 ntBASIC19.89■□□□□ 0.77
VPS53Q5VIR6 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS53Q5VIR6 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 GPAA1P2-202ENST00000606848 1787 ntBASIC19.88■□□□□ 0.77
VPS53Q5VIR6 GGT3P-204ENST00000453783 1664 ntBASIC19.88■□□□□ 0.77
VPS53Q5VIR6 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 YBX1P5-201ENST00000509441 847 ntBASIC19.88■□□□□ 0.77
VPS53Q5VIR6 AC112191.1-201ENST00000523689 701 ntBASIC19.88■□□□□ 0.77
VPS53Q5VIR6 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 MIR4469-201ENST00000583919 79 ntBASIC19.88■□□□□ 0.77
VPS53Q5VIR6 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
VPS53Q5VIR6 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms