Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 BCYRN1-201ENST00000418539 200 ntBASIC15.87■□□□□ 0.13
COL28A1Q2UY09 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 SLC25A6P2-201ENST00000497974 877 ntBASIC15.87■□□□□ 0.13
COL28A1Q2UY09 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 AC016396.2-201ENST00000562575 1417 ntBASIC15.86■□□□□ 0.13
COL28A1Q2UY09 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 AC106886.1-201ENST00000568660 600 ntBASIC15.86■□□□□ 0.13
COL28A1Q2UY09 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL28A1Q2UY09 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 HCG4-201ENST00000418983 998 ntBASIC15.85■□□□□ 0.13
COL28A1Q2UY09 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 AC011495.1-201ENST00000498085 584 ntBASIC15.85■□□□□ 0.13
COL28A1Q2UY09 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 AC104794.3-201ENST00000566840 1248 ntBASIC15.85■□□□□ 0.13
COL28A1Q2UY09 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms