Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.97■□□□□ 0.31
HMGA1P17096 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
HMGA1P17096 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGA1P17096 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.96■□□□□ 0.31
HMGA1P17096 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGA1P17096 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGA1P17096 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGA1P17096 AL136982.4-201ENST00000437689 1740 ntBASIC16.96■□□□□ 0.31
HMGA1P17096 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGA1P17096 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.96■□□□□ 0.31
HMGA1P17096 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.96■□□□□ 0.31
HMGA1P17096 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGA1P17096 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGA1P17096 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
HMGA1P17096 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGA1P17096 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGA1P17096 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGA1P17096 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGA1P17096 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGA1P17096 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
HMGA1P17096 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
HMGA1P17096 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGA1P17096 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGA1P17096 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.96■□□□□ 0.31
HMGA1P17096 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGA1P17096 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGA1P17096 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.96■□□□□ 0.31
HMGA1P17096 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGA1P17096 POU5F1P6-201ENST00000466990 990 ntBASIC16.96■□□□□ 0.31
HMGA1P17096 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.96■□□□□ 0.31
HMGA1P17096 AC135586.1-201ENST00000539323 574 ntBASIC16.96■□□□□ 0.31
HMGA1P17096 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.96■□□□□ 0.31
HMGA1P17096 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.96■□□□□ 0.31
HMGA1P17096 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGA1P17096 AC012645.4-201ENST00000610691 1061 ntBASIC16.96■□□□□ 0.31
HMGA1P17096 AC004790.1-201ENST00000612686 536 ntBASIC16.96■□□□□ 0.31
HMGA1P17096 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
HMGA1P17096 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGA1P17096 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGA1P17096 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGA1P17096 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
HMGA1P17096 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGA1P17096 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGA1P17096 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.3
HMGA1P17096 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HMGA1P17096 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
HMGA1P17096 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.96■□□□□ 0.3
HMGA1P17096 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
HMGA1P17096 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.96■□□□□ 0.3
HMGA1P17096 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.96■□□□□ 0.3
HMGA1P17096 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 AC092171.3-201ENST00000610122 2651 ntBASIC16.95■□□□□ 0.3
HMGA1P17096 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGA1P17096 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGA1P17096 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HMGA1P17096 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGA1P17096 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGA1P17096 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGA1P17096 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
HMGA1P17096 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HMGA1P17096 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGA1P17096 SERBP1P3-201ENST00000459980 809 ntBASIC16.95■□□□□ 0.3
HMGA1P17096 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.95■□□□□ 0.3
HMGA1P17096 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.95■□□□□ 0.3
HMGA1P17096 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.95■□□□□ 0.3
HMGA1P17096 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.95■□□□□ 0.3
HMGA1P17096 FLJ38576-201ENST00000623820 2459 ntBASIC16.95■□□□□ 0.3
HMGA1P17096 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGA1P17096 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HMGA1P17096 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.95■□□□□ 0.3
HMGA1P17096 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGA1P17096 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGA1P17096 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
HMGA1P17096 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGA1P17096 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGA1P17096 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HMGA1P17096 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGA1P17096 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
HMGA1P17096 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
HMGA1P17096 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGA1P17096 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGA1P17096 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms