Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB1P09429 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB1P09429 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB1P09429 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HMGB1P09429 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
HMGB1P09429 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
HMGB1P09429 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.43■□□□□ 0.7
HMGB1P09429 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 AC040169.1-201ENST00000565382 521 ntBASIC19.43■□□□□ 0.7
HMGB1P09429 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.43■□□□□ 0.7
HMGB1P09429 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HMGB1P09429 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HMGB1P09429 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 ACE-204ENST00000428043 5120 ntTSL 2 BASIC19.43■□□□□ 0.7
HMGB1P09429 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
HMGB1P09429 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB1P09429 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
HMGB1P09429 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC19.42■□□□□ 0.7
HMGB1P09429 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC19.42■□□□□ 0.7
HMGB1P09429 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC19.42■□□□□ 0.7
HMGB1P09429 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
HMGB1P09429 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
HMGB1P09429 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HMGB1P09429 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.42■□□□□ 0.7
HMGB1P09429 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.42■□□□□ 0.7
HMGB1P09429 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC19.42■□□□□ 0.7
HMGB1P09429 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.42■□□□□ 0.7
HMGB1P09429 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
HMGB1P09429 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
HMGB1P09429 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 C8orf49-201ENST00000525043 1968 ntBASIC19.42■□□□□ 0.7
HMGB1P09429 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC19.42■□□□□ 0.7
HMGB1P09429 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
HMGB1P09429 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB1P09429 AC073439.1-201ENST00000624121 1774 ntBASIC19.42■□□□□ 0.7
HMGB1P09429 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.42■□□□□ 0.7
HMGB1P09429 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
HMGB1P09429 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.41■□□□□ 0.7
HMGB1P09429 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB1P09429 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB1P09429 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB1P09429 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.41■□□□□ 0.7
HMGB1P09429 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB1P09429 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB1P09429 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB1P09429 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
HMGB1P09429 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB1P09429 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB1P09429 AL022342.1-201ENST00000400363 863 ntBASIC19.41■□□□□ 0.7
HMGB1P09429 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.41■□□□□ 0.7
HMGB1P09429 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.41■□□□□ 0.7
HMGB1P09429 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB1P09429 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
HMGB1P09429 NMU-202ENST00000505262 693 ntTSL 3 BASIC19.41■□□□□ 0.7
HMGB1P09429 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB1P09429 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC19.41■□□□□ 0.7
HMGB1P09429 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
HMGB1P09429 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC19.41■□□□□ 0.7
HMGB1P09429 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
HMGB1P09429 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB1P09429 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB1P09429 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB1P09429 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC19.41■□□□□ 0.7
HMGB1P09429 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB1P09429 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB1P09429 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
HMGB1P09429 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB1P09429 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms