Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HOXC4P09017 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
HOXC4P09017 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HOXC4P09017 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HOXC4P09017 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC15.96■□□□□ 0.15
HOXC4P09017 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.96■□□□□ 0.15
HOXC4P09017 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
HOXC4P09017 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HOXC4P09017 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HOXC4P09017 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HOXC4P09017 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
HOXC4P09017 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
HOXC4P09017 FO393414.2-201ENST00000405153 598 ntBASIC15.96■□□□□ 0.15
HOXC4P09017 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HOXC4P09017 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.96■□□□□ 0.15
HOXC4P09017 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC15.96■□□□□ 0.15
HOXC4P09017 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.96■□□□□ 0.15
HOXC4P09017 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.96■□□□□ 0.15
HOXC4P09017 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.96■□□□□ 0.15
HOXC4P09017 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.96■□□□□ 0.15
HOXC4P09017 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
HOXC4P09017 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HOXC4P09017 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
HOXC4P09017 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.96■□□□□ 0.15
HOXC4P09017 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
HOXC4P09017 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HOXC4P09017 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HOXC4P09017 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HOXC4P09017 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC15.96■□□□□ 0.14
HOXC4P09017 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.96■□□□□ 0.14
HOXC4P09017 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.14
HOXC4P09017 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
HOXC4P09017 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.95■□□□□ 0.14
HOXC4P09017 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.95■□□□□ 0.14
HOXC4P09017 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
HOXC4P09017 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.95■□□□□ 0.14
HOXC4P09017 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
HOXC4P09017 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15.95■□□□□ 0.14
HOXC4P09017 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.95■□□□□ 0.14
HOXC4P09017 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.95■□□□□ 0.14
HOXC4P09017 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.95■□□□□ 0.14
HOXC4P09017 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.95■□□□□ 0.14
HOXC4P09017 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.95■□□□□ 0.14
HOXC4P09017 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC15.95■□□□□ 0.14
HOXC4P09017 AL033527.5-202ENST00000641632 1098 ntBASIC15.95■□□□□ 0.14
HOXC4P09017 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.95■□□□□ 0.14
HOXC4P09017 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC15.95■□□□□ 0.14
HOXC4P09017 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.95■□□□□ 0.14
HOXC4P09017 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.95■□□□□ 0.14
HOXC4P09017 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
HOXC4P09017 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.95■□□□□ 0.14
HOXC4P09017 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.95■□□□□ 0.14
HOXC4P09017 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.95■□□□□ 0.14
HOXC4P09017 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.95■□□□□ 0.14
HOXC4P09017 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.95■□□□□ 0.14
HOXC4P09017 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
HOXC4P09017 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.94■□□□□ 0.14
HOXC4P09017 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
HOXC4P09017 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.94■□□□□ 0.14
HOXC4P09017 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
HOXC4P09017 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
HOXC4P09017 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.94■□□□□ 0.14
HOXC4P09017 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.94■□□□□ 0.14
HOXC4P09017 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.94■□□□□ 0.14
HOXC4P09017 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
HOXC4P09017 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.94■□□□□ 0.14
HOXC4P09017 AC004987.2-201ENST00000395959 1148 ntBASIC15.94■□□□□ 0.14
HOXC4P09017 AL035633.1-201ENST00000406139 838 ntBASIC15.94■□□□□ 0.14
HOXC4P09017 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.94■□□□□ 0.14
HOXC4P09017 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms