Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.86■□□□□ 0.29
COL6A3P12111 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
COL6A3P12111 SDHD-202ENST00000525291 790 ntTSL 3 BASIC16.85■□□□□ 0.29
COL6A3P12111 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
COL6A3P12111 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.85■□□□□ 0.29
COL6A3P12111 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A3P12111 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC16.85■□□□□ 0.29
COL6A3P12111 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A3P12111 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A3P12111 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
COL6A3P12111 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A3P12111 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC16.85■□□□□ 0.29
COL6A3P12111 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.85■□□□□ 0.29
COL6A3P12111 HOMER2P2-201ENST00000451621 847 ntBASIC16.85■□□□□ 0.29
COL6A3P12111 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A3P12111 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.85■□□□□ 0.29
COL6A3P12111 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.85■□□□□ 0.29
COL6A3P12111 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC16.85■□□□□ 0.29
COL6A3P12111 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.85■□□□□ 0.29
COL6A3P12111 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.85■□□□□ 0.29
COL6A3P12111 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
COL6A3P12111 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A3P12111 REXO1L8P-201ENST00000604378 1897 ntBASIC16.85■□□□□ 0.29
COL6A3P12111 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A3P12111 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A3P12111 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A3P12111 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A3P12111 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A3P12111 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A3P12111 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.85■□□□□ 0.29
COL6A3P12111 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A3P12111 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
COL6A3P12111 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
COL6A3P12111 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.85■□□□□ 0.29
COL6A3P12111 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
COL6A3P12111 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC16.85■□□□□ 0.29
COL6A3P12111 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A3P12111 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A3P12111 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC16.84■□□□□ 0.29
COL6A3P12111 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A3P12111 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.84■□□□□ 0.29
COL6A3P12111 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
COL6A3P12111 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
COL6A3P12111 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
COL6A3P12111 BAATP1-201ENST00000412284 1225 ntBASIC16.84■□□□□ 0.29
COL6A3P12111 FAM86LP-201ENST00000478302 853 ntBASIC16.84■□□□□ 0.29
COL6A3P12111 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC16.84■□□□□ 0.29
COL6A3P12111 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
COL6A3P12111 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC16.84■□□□□ 0.29
COL6A3P12111 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A3P12111 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
COL6A3P12111 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.84■□□□□ 0.29
COL6A3P12111 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC16.84■□□□□ 0.29
COL6A3P12111 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A3P12111 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A3P12111 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A3P12111 CD8B2-202ENST00000417670 633 ntBASIC16.84■□□□□ 0.29
COL6A3P12111 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A3P12111 AC012362.1-201ENST00000434906 739 ntBASIC16.84■□□□□ 0.29
COL6A3P12111 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A3P12111 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.84■□□□□ 0.29
COL6A3P12111 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A3P12111 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.84■□□□□ 0.29
COL6A3P12111 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC16.84■□□□□ 0.29
COL6A3P12111 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.83■□□□□ 0.29
COL6A3P12111 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
COL6A3P12111 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL6A3P12111 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
COL6A3P12111 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL6A3P12111 ALG1L13P-202ENST00000519320 584 ntBASIC16.83■□□□□ 0.29
COL6A3P12111 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.83■□□□□ 0.29
COL6A3P12111 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC16.83■□□□□ 0.29
COL6A3P12111 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.83■□□□□ 0.28
COL6A3P12111 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A3P12111 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.83■□□□□ 0.28
COL6A3P12111 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC16.83■□□□□ 0.28
COL6A3P12111 AC022217.1-201ENST00000521069 738 ntBASIC16.83■□□□□ 0.28
COL6A3P12111 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.83■□□□□ 0.28
COL6A3P12111 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.83■□□□□ 0.28
COL6A3P12111 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC16.83■□□□□ 0.28
COL6A3P12111 MPDU1-223ENST00000582151 728 ntBASIC16.83■□□□□ 0.28
COL6A3P12111 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
COL6A3P12111 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
COL6A3P12111 AC025271.4-201ENST00000621477 1726 ntBASIC16.83■□□□□ 0.28
COL6A3P12111 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A3P12111 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A3P12111 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.83■□□□□ 0.28
COL6A3P12111 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.83■□□□□ 0.28
COL6A3P12111 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC16.83■□□□□ 0.28
COL6A3P12111 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A3P12111 Z97180.1-201ENST00000445173 988 ntBASIC16.83■□□□□ 0.28
COL6A3P12111 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A3P12111 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.83■□□□□ 0.28
COL6A3P12111 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A3P12111 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC16.83■□□□□ 0.28
COL6A3P12111 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
COL6A3P12111 TUBBP5-203ENST00000508529 1334 ntBASIC16.82■□□□□ 0.28
COL6A3P12111 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
COL6A3P12111 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A3P12111 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms