Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 MIR1909-201ENST00000411312 80 ntBASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 IFNA4-201ENST00000421715 978 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 ACA64.2-201ENST00000459014 129 ntBASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 AC080080.1-201ENST00000625121 2420 ntBASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
LIMD1Q9UGP4 FOXO1B-201ENST00000504678 1527 ntBASIC17.21■□□□□ 0.34
LIMD1Q9UGP4 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
LIMD1Q9UGP4 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
LIMD1Q9UGP4 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
LIMD1Q9UGP4 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
LIMD1Q9UGP4 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
LIMD1Q9UGP4 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
LIMD1Q9UGP4 AC108860.2-201ENST00000562760 2183 ntBASIC17.21■□□□□ 0.34
LIMD1Q9UGP4 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 NAA38-206ENST00000576384 424 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 CYP2A7P1-201ENST00000595391 815 ntBASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.2■□□□□ 0.34
LIMD1Q9UGP4 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 MIR658-201ENST00000385210 100 ntBASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 AC087499.6-201ENST00000411576 835 ntBASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 DFFBP1-201ENST00000433250 979 ntBASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 AC011495.1-201ENST00000498085 584 ntBASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 PRYP6-201ENST00000514804 343 ntBASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 MIR6805-201ENST00000615055 62 ntBASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms