Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CHMP4AQ9BY43 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC21■□□□□ 0.95
CHMP4AQ9BY43 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP4AQ9BY43 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CHMP4AQ9BY43 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP4AQ9BY43 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CHMP4AQ9BY43 OS9-205ENST00000413095 1660 ntTSL 2 BASIC21■□□□□ 0.95
CHMP4AQ9BY43 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CHMP4AQ9BY43 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHMP4AQ9BY43 AC107890.1-201ENST00000422478 521 ntBASIC21■□□□□ 0.95
CHMP4AQ9BY43 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC21■□□□□ 0.95
CHMP4AQ9BY43 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC21■□□□□ 0.95
CHMP4AQ9BY43 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHMP4AQ9BY43 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHMP4AQ9BY43 RNA5SP410-201ENST00000516285 106 ntBASIC21■□□□□ 0.95
CHMP4AQ9BY43 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC21■□□□□ 0.95
CHMP4AQ9BY43 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC21■□□□□ 0.95
CHMP4AQ9BY43 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC21■□□□□ 0.95
CHMP4AQ9BY43 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC21■□□□□ 0.95
CHMP4AQ9BY43 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC21■□□□□ 0.95
CHMP4AQ9BY43 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHMP4AQ9BY43 AC005622.1-201ENST00000636801 1703 ntBASIC21■□□□□ 0.95
CHMP4AQ9BY43 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
CHMP4AQ9BY43 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP4AQ9BY43 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHMP4AQ9BY43 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CHMP4AQ9BY43 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC21■□□□□ 0.95
CHMP4AQ9BY43 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 AC012313.1-201ENST00000593393 3059 ntBASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4AQ9BY43 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 AC008677.1-201ENST00000519230 1561 ntBASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 CD81-202ENST00000381036 880 ntTSL 3 BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 BAD-202ENST00000394531 631 ntTSL 3 BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 BAD-207ENST00000544785 525 ntTSL 3 BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4AQ9BY43 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms