Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEK3P51956 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.08■□□□□ 0.32
NEK3P51956 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.08■□□□□ 0.32
NEK3P51956 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEK3P51956 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEK3P51956 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEK3P51956 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
NEK3P51956 AC211486.1-202ENST00000416371 468 ntBASIC17.08■□□□□ 0.32
NEK3P51956 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
NEK3P51956 AC211476.1-201ENST00000503899 468 ntBASIC17.08■□□□□ 0.32
NEK3P51956 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
NEK3P51956 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
NEK3P51956 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.08■□□□□ 0.32
NEK3P51956 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.08■□□□□ 0.32
NEK3P51956 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.08■□□□□ 0.32
NEK3P51956 AC134684.3-201ENST00000641758 218 ntBASIC17.08■□□□□ 0.32
NEK3P51956 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NEK3P51956 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEK3P51956 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEK3P51956 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NEK3P51956 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEK3P51956 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEK3P51956 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
NEK3P51956 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEK3P51956 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEK3P51956 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEK3P51956 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.08■□□□□ 0.32
NEK3P51956 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NEK3P51956 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.08■□□□□ 0.32
NEK3P51956 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.08■□□□□ 0.32
NEK3P51956 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEK3P51956 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NEK3P51956 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
NEK3P51956 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.07■□□□□ 0.32
NEK3P51956 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.07■□□□□ 0.32
NEK3P51956 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.07■□□□□ 0.32
NEK3P51956 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
NEK3P51956 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
NEK3P51956 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
NEK3P51956 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 HTR5BP-201ENST00000430851 1154 ntBASIC17.07■□□□□ 0.32
NEK3P51956 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.07■□□□□ 0.32
NEK3P51956 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.07■□□□□ 0.32
NEK3P51956 YBX1P5-201ENST00000509441 847 ntBASIC17.07■□□□□ 0.32
NEK3P51956 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.07■□□□□ 0.32
NEK3P51956 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 AC068137.2-201ENST00000605408 478 ntBASIC17.07■□□□□ 0.32
NEK3P51956 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
NEK3P51956 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.07■□□□□ 0.32
NEK3P51956 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.07■□□□□ 0.32
NEK3P51956 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NEK3P51956 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
NEK3P51956 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
NEK3P51956 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.06■□□□□ 0.32
NEK3P51956 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NEK3P51956 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
NEK3P51956 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NEK3P51956 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NEK3P51956 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NEK3P51956 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NEK3P51956 ALOX12P2-203ENST00000570921 1945 ntBASIC17.06■□□□□ 0.32
NEK3P51956 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NEK3P51956 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NEK3P51956 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NEK3P51956 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NEK3P51956 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
NEK3P51956 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NEK3P51956 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NEK3P51956 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NEK3P51956 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.06■□□□□ 0.32
NEK3P51956 RPS8P6-201ENST00000426177 609 ntBASIC17.06■□□□□ 0.32
NEK3P51956 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.06■□□□□ 0.32
NEK3P51956 MIR4469-201ENST00000583919 79 ntBASIC17.06■□□□□ 0.32
NEK3P51956 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.06■□□□□ 0.32
NEK3P51956 REXO1L3P-201ENST00000622202 1288 ntBASIC17.06■□□□□ 0.32
NEK3P51956 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NEK3P51956 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.06■□□□□ 0.32
NEK3P51956 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.06■□□□□ 0.32
NEK3P51956 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.06■□□□□ 0.32
NEK3P51956 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NEK3P51956 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NEK3P51956 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms