Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.3■□□□□ 0.2
CXCL12P48061 PAM16-204ENST00000571941 674 ntTSL 3 BASIC16.3■□□□□ 0.2
CXCL12P48061 AC233724.13-201ENST00000598383 410 ntBASIC16.3■□□□□ 0.2
CXCL12P48061 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.3■□□□□ 0.2
CXCL12P48061 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.3■□□□□ 0.2
CXCL12P48061 AL139011.1-202ENST00000642063 584 ntBASIC16.3■□□□□ 0.2
CXCL12P48061 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL12P48061 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
CXCL12P48061 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL12P48061 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL12P48061 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.3■□□□□ 0.2
CXCL12P48061 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CXCL12P48061 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL12P48061 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL12P48061 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL12P48061 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL12P48061 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CXCL12P48061 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL12P48061 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CXCL12P48061 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CXCL12P48061 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.29■□□□□ 0.2
CXCL12P48061 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CXCL12P48061 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.29■□□□□ 0.2
CXCL12P48061 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 AC018665.1-201ENST00000622927 1362 ntBASIC16.29■□□□□ 0.2
CXCL12P48061 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 FO393414.2-201ENST00000405153 598 ntBASIC16.29■□□□□ 0.2
CXCL12P48061 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.29■□□□□ 0.2
CXCL12P48061 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
CXCL12P48061 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 AC025048.3-201ENST00000590609 569 ntBASIC16.29■□□□□ 0.2
CXCL12P48061 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.29■□□□□ 0.2
CXCL12P48061 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 MIR6787-201ENST00000616675 61 ntBASIC16.29■□□□□ 0.2
CXCL12P48061 AC005702.4-201ENST00000618393 416 ntBASIC16.29■□□□□ 0.2
CXCL12P48061 GPR182-203ENST00000622922 591 ntBASIC16.29■□□□□ 0.2
CXCL12P48061 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.29■□□□□ 0.2
CXCL12P48061 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.29■□□□□ 0.2
CXCL12P48061 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CXCL12P48061 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CXCL12P48061 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL12P48061 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.28■□□□□ 0.2
CXCL12P48061 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 KRT8P44-201ENST00000441609 1350 ntBASIC16.28■□□□□ 0.2
CXCL12P48061 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
CXCL12P48061 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.28■□□□□ 0.2
CXCL12P48061 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.28■□□□□ 0.2
CXCL12P48061 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CXCL12P48061 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.28■□□□□ 0.2
CXCL12P48061 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.28■□□□□ 0.2
CXCL12P48061 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.28■□□□□ 0.2
CXCL12P48061 KLF2P4-201ENST00000451959 1225 ntBASIC16.28■□□□□ 0.2
CXCL12P48061 CTBP2P5-201ENST00000454986 1264 ntBASIC16.28■□□□□ 0.2
CXCL12P48061 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL12P48061 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.28■□□□□ 0.2
CXCL12P48061 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.28■□□□□ 0.2
CXCL12P48061 USP32P1-208ENST00000506594 1164 ntBASIC16.28■□□□□ 0.2
CXCL12P48061 SLC25A47P1-201ENST00000531577 414 ntBASIC16.28■□□□□ 0.2
CXCL12P48061 AL583810.1-201ENST00000553344 1045 ntBASIC16.28■□□□□ 0.2
CXCL12P48061 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
CXCL12P48061 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.28■□□□□ 0.2
CXCL12P48061 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.28■□□□□ 0.2
CXCL12P48061 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms