Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN9P43378 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN9P43378 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PTPN9P43378 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.16■□□□□ 0.34
PTPN9P43378 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.16■□□□□ 0.34
PTPN9P43378 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN9P43378 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.15■□□□□ 0.34
PTPN9P43378 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.15■□□□□ 0.34
PTPN9P43378 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PTPN9P43378 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.15■□□□□ 0.34
PTPN9P43378 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.15■□□□□ 0.34
PTPN9P43378 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.15■□□□□ 0.34
PTPN9P43378 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.15■□□□□ 0.34
PTPN9P43378 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
PTPN9P43378 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.15■□□□□ 0.34
PTPN9P43378 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
PTPN9P43378 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.15■□□□□ 0.34
PTPN9P43378 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.15■□□□□ 0.34
PTPN9P43378 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.15■□□□□ 0.34
PTPN9P43378 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
PTPN9P43378 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
PTPN9P43378 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.15■□□□□ 0.34
PTPN9P43378 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.15■□□□□ 0.34
PTPN9P43378 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
PTPN9P43378 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.15■□□□□ 0.34
PTPN9P43378 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.15■□□□□ 0.34
PTPN9P43378 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PTPN9P43378 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.15■□□□□ 0.34
PTPN9P43378 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN9P43378 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN9P43378 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN9P43378 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.14■□□□□ 0.33
PTPN9P43378 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
PTPN9P43378 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN9P43378 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.14■□□□□ 0.33
PTPN9P43378 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN9P43378 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN9P43378 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
PTPN9P43378 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN9P43378 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN9P43378 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN9P43378 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN9P43378 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN9P43378 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN9P43378 TFAMP1-201ENST00000412727 736 ntBASIC17.14■□□□□ 0.33
PTPN9P43378 HTR5BP-201ENST00000430851 1154 ntBASIC17.14■□□□□ 0.33
PTPN9P43378 DNAJB3-201ENST00000446806 729 ntBASIC17.14■□□□□ 0.33
PTPN9P43378 RN7SL589P-201ENST00000481268 310 ntBASIC17.14■□□□□ 0.33
PTPN9P43378 ALG1L5P-201ENST00000482043 771 ntBASIC17.14■□□□□ 0.33
PTPN9P43378 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.14■□□□□ 0.33
PTPN9P43378 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN9P43378 PRYP6-201ENST00000514804 343 ntBASIC17.14■□□□□ 0.33
PTPN9P43378 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.14■□□□□ 0.33
PTPN9P43378 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.14■□□□□ 0.33
PTPN9P43378 AL135744.1-201ENST00000565098 629 ntBASIC17.14■□□□□ 0.33
PTPN9P43378 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.14■□□□□ 0.33
PTPN9P43378 AC073389.1-201ENST00000595595 795 ntBASIC17.14■□□□□ 0.33
PTPN9P43378 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.14■□□□□ 0.33
PTPN9P43378 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.14■□□□□ 0.33
PTPN9P43378 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.14■□□□□ 0.33
PTPN9P43378 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
PTPN9P43378 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.14■□□□□ 0.33
PTPN9P43378 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN9P43378 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
PTPN9P43378 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN9P43378 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN9P43378 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
PTPN9P43378 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN9P43378 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
PTPN9P43378 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.13■□□□□ 0.33
PTPN9P43378 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.13■□□□□ 0.33
PTPN9P43378 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.13■□□□□ 0.33
PTPN9P43378 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
PTPN9P43378 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 DOC2GP-204ENST00000639052 2548 ntBASIC17.13■□□□□ 0.33
PTPN9P43378 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.13■□□□□ 0.33
PTPN9P43378 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
PTPN9P43378 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms