Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC19.36■□□□□ 0.69
NUP88Q99567 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 GATD1-206ENST00000526325 756 ntTSL 5 BASIC19.36■□□□□ 0.69
NUP88Q99567 ALG1L8P-201ENST00000533887 760 ntBASIC19.36■□□□□ 0.69
NUP88Q99567 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC19.36■□□□□ 0.69
NUP88Q99567 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC19.36■□□□□ 0.69
NUP88Q99567 DUT-210ENST00000559935 569 ntTSL 3 BASIC19.36■□□□□ 0.69
NUP88Q99567 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 INO80C-206ENST00000586489 594 ntTSL 3 BASIC19.36■□□□□ 0.69
NUP88Q99567 AC021097.1-201ENST00000607902 574 ntBASIC19.36■□□□□ 0.69
NUP88Q99567 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.36■□□□□ 0.69
NUP88Q99567 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
NUP88Q99567 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.36■□□□□ 0.69
NUP88Q99567 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.36■□□□□ 0.69
NUP88Q99567 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.36■□□□□ 0.69
NUP88Q99567 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC19.36■□□□□ 0.69
NUP88Q99567 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
NUP88Q99567 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP88Q99567 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.35■□□□□ 0.69
NUP88Q99567 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NUP88Q99567 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP88Q99567 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NUP88Q99567 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NUP88Q99567 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC19.35■□□□□ 0.69
NUP88Q99567 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.35■□□□□ 0.69
NUP88Q99567 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
NUP88Q99567 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP88Q99567 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NUP88Q99567 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.35■□□□□ 0.69
NUP88Q99567 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NUP88Q99567 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP88Q99567 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC19.35■□□□□ 0.69
NUP88Q99567 MIR3197-201ENST00000582241 73 ntBASIC19.35■□□□□ 0.69
NUP88Q99567 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP88Q99567 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
NUP88Q99567 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP88Q99567 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP88Q99567 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NUP88Q99567 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.35■□□□□ 0.69
NUP88Q99567 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
NUP88Q99567 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NUP88Q99567 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NUP88Q99567 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NUP88Q99567 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
NUP88Q99567 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NUP88Q99567 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.34■□□□□ 0.69
NUP88Q99567 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
NUP88Q99567 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NUP88Q99567 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NUP88Q99567 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC19.34■□□□□ 0.69
NUP88Q99567 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NUP88Q99567 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC19.34■□□□□ 0.69
NUP88Q99567 KLF2P3-201ENST00000451977 1087 ntBASIC19.34■□□□□ 0.69
NUP88Q99567 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC19.34■□□□□ 0.69
NUP88Q99567 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC19.34■□□□□ 0.69
NUP88Q99567 AC093214.1-201ENST00000511688 1107 ntBASIC19.34■□□□□ 0.69
NUP88Q99567 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.34■□□□□ 0.69
NUP88Q99567 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC19.34■□□□□ 0.69
NUP88Q99567 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.34■□□□□ 0.69
NUP88Q99567 AC092364.2-202ENST00000597012 1073 ntBASIC19.34■□□□□ 0.69
NUP88Q99567 NKG7-205ENST00000600427 520 ntTSL 3 BASIC19.34■□□□□ 0.69
NUP88Q99567 MIR6080-201ENST00000617359 66 ntBASIC19.34■□□□□ 0.69
NUP88Q99567 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NUP88Q99567 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC19.34■□□□□ 0.69
NUP88Q99567 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.34■□□□□ 0.69
NUP88Q99567 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NUP88Q99567 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
NUP88Q99567 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC19.34■□□□□ 0.69
NUP88Q99567 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NUP88Q99567 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
NUP88Q99567 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NUP88Q99567 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
NUP88Q99567 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
NUP88Q99567 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
NUP88Q99567 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.33■□□□□ 0.69
NUP88Q99567 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.33■□□□□ 0.69
NUP88Q99567 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC19.33■□□□□ 0.69
NUP88Q99567 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
NUP88Q99567 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC19.33■□□□□ 0.69
NUP88Q99567 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
NUP88Q99567 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
NUP88Q99567 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
NUP88Q99567 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
NUP88Q99567 CALY-203ENST00000368558 825 ntTSL 5 BASIC19.33■□□□□ 0.68
NUP88Q99567 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
NUP88Q99567 WRB-204ENST00000398753 699 ntTSL 3 BASIC19.33■□□□□ 0.68
NUP88Q99567 MIR943-201ENST00000401286 94 ntBASIC19.33■□□□□ 0.68
NUP88Q99567 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
NUP88Q99567 AC142381.1-201ENST00000426099 345 ntBASIC19.33■□□□□ 0.68
NUP88Q99567 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.33■□□□□ 0.68
NUP88Q99567 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms