Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 TNXA-203ENST00000507684 2038 ntBASIC16.1■□□□□ 0.17
VPS13AQ96RL7 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 OLR1-203ENST00000432556 950 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 MIR7845-201ENST00000618396 99 ntBASIC16.1■□□□□ 0.17
VPS13AQ96RL7 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 TDH-203ENST00000531764 1110 ntBASIC16.1■□□□□ 0.17
VPS13AQ96RL7 PRKN-211ENST00000615065 261 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS13AQ96RL7 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 SLC25A24P2-201ENST00000415059 510 ntBASIC16.09■□□□□ 0.17
VPS13AQ96RL7 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 AP001350.2-201ENST00000625104 1094 ntBASIC16.09■□□□□ 0.17
VPS13AQ96RL7 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 AC092053.1-201ENST00000605787 1936 ntBASIC16.09■□□□□ 0.17
VPS13AQ96RL7 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 CNN2P8-201ENST00000421872 913 ntBASIC16.09■□□□□ 0.17
VPS13AQ96RL7 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 PTK2-225ENST00000520892 571 ntTSL 4 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 U62317.3-201ENST00000608319 855 ntBASIC16.09■□□□□ 0.17
VPS13AQ96RL7 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC16.09■□□□□ 0.17
VPS13AQ96RL7 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
VPS13AQ96RL7 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
VPS13AQ96RL7 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
VPS13AQ96RL7 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
VPS13AQ96RL7 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
VPS13AQ96RL7 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
VPS13AQ96RL7 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC16.08■□□□□ 0.17
VPS13AQ96RL7 CSH2-202ENST00000345366 598 ntTSL 5 BASIC16.08■□□□□ 0.17
VPS13AQ96RL7 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
VPS13AQ96RL7 SPDYE17-201ENST00000412399 783 ntBASIC16.08■□□□□ 0.17
VPS13AQ96RL7 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
VPS13AQ96RL7 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.08■□□□□ 0.17
VPS13AQ96RL7 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC16.08■□□□□ 0.17
VPS13AQ96RL7 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.08■□□□□ 0.17
VPS13AQ96RL7 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.08■□□□□ 0.17
VPS13AQ96RL7 AC021097.1-201ENST00000607902 574 ntBASIC16.08■□□□□ 0.17
VPS13AQ96RL7 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS13AQ96RL7 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms