Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.47■□□□□ 0.23
TTC28Q96AY4 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TTC28Q96AY4 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TTC28Q96AY4 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TTC28Q96AY4 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC16.47■□□□□ 0.23
TTC28Q96AY4 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TTC28Q96AY4 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC16.47■□□□□ 0.23
TTC28Q96AY4 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TTC28Q96AY4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
TTC28Q96AY4 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC16.47■□□□□ 0.23
TTC28Q96AY4 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TTC28Q96AY4 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TTC28Q96AY4 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.47■□□□□ 0.23
TTC28Q96AY4 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TTC28Q96AY4 MIR1202-201ENST00000408529 83 ntBASIC16.47■□□□□ 0.23
TTC28Q96AY4 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC16.47■□□□□ 0.23
TTC28Q96AY4 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TTC28Q96AY4 RPL13P2-201ENST00000440687 659 ntBASIC16.47■□□□□ 0.23
TTC28Q96AY4 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TTC28Q96AY4 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
TTC28Q96AY4 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC16.47■□□□□ 0.23
TTC28Q96AY4 AC078819.1-201ENST00000547454 765 ntBASIC16.47■□□□□ 0.23
TTC28Q96AY4 AC012085.1-201ENST00000548270 765 ntBASIC16.47■□□□□ 0.23
TTC28Q96AY4 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
TTC28Q96AY4 AP001065.2-201ENST00000617205 644 ntBASIC16.47■□□□□ 0.23
TTC28Q96AY4 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC16.47■□□□□ 0.23
TTC28Q96AY4 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
TTC28Q96AY4 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
TTC28Q96AY4 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
TTC28Q96AY4 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TTC28Q96AY4 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TTC28Q96AY4 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TTC28Q96AY4 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TTC28Q96AY4 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.47■□□□□ 0.23
TTC28Q96AY4 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TTC28Q96AY4 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TTC28Q96AY4 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TTC28Q96AY4 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TTC28Q96AY4 AC024681.1-201ENST00000521917 487 ntBASIC16.46■□□□□ 0.23
TTC28Q96AY4 ACR-203ENST00000529621 708 ntTSL 5 BASIC16.46■□□□□ 0.23
TTC28Q96AY4 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.46■□□□□ 0.23
TTC28Q96AY4 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
TTC28Q96AY4 EIF5AP2-201ENST00000585668 1047 ntBASIC16.46■□□□□ 0.23
TTC28Q96AY4 DIO1-215ENST00000610607 796 ntTSL 5 BASIC16.46■□□□□ 0.23
TTC28Q96AY4 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC16.46■□□□□ 0.23
TTC28Q96AY4 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TTC28Q96AY4 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.46■□□□□ 0.23
TTC28Q96AY4 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TTC28Q96AY4 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TTC28Q96AY4 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.46■□□□□ 0.23
TTC28Q96AY4 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
TTC28Q96AY4 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.46■□□□□ 0.23
TTC28Q96AY4 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TTC28Q96AY4 C1QBPP1-201ENST00000400117 770 ntBASIC16.46■□□□□ 0.23
TTC28Q96AY4 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC16.46■□□□□ 0.23
TTC28Q96AY4 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC16.46■□□□□ 0.23
TTC28Q96AY4 AC022217.1-201ENST00000521069 738 ntBASIC16.46■□□□□ 0.23
TTC28Q96AY4 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC16.46■□□□□ 0.23
TTC28Q96AY4 AC023310.1-201ENST00000554836 735 ntBASIC16.46■□□□□ 0.23
TTC28Q96AY4 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
TTC28Q96AY4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TTC28Q96AY4 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
TTC28Q96AY4 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
TTC28Q96AY4 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TTC28Q96AY4 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC16.46■□□□□ 0.22
TTC28Q96AY4 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC16.46■□□□□ 0.22
TTC28Q96AY4 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
TTC28Q96AY4 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TTC28Q96AY4 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC16.46■□□□□ 0.22
TTC28Q96AY4 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 DNAJB1P1-201ENST00000429417 1024 ntBASIC16.45■□□□□ 0.22
TTC28Q96AY4 AL133466.1-201ENST00000447582 150 ntBASIC16.45■□□□□ 0.22
TTC28Q96AY4 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 HNRNPA1P48-202ENST00000565308 961 ntBASIC16.45■□□□□ 0.22
TTC28Q96AY4 AC025279.2-201ENST00000569730 653 ntBASIC16.45■□□□□ 0.22
TTC28Q96AY4 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TTC28Q96AY4 LINC01115-203ENST00000606068 577 ntBASIC16.45■□□□□ 0.22
TTC28Q96AY4 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TTC28Q96AY4 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TTC28Q96AY4 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TTC28Q96AY4 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TTC28Q96AY4 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TTC28Q96AY4 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 BX539320.1-201ENST00000623759 877 ntBASIC16.45■□□□□ 0.22
TTC28Q96AY4 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms