Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL6A5A8TX70 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL6A5A8TX70 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL6A5A8TX70 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL6A5A8TX70 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC12.61□□□□□ -0.39
COL6A5A8TX70 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC12.61□□□□□ -0.39
COL6A5A8TX70 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
COL6A5A8TX70 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 HIST3H2BA-201ENST00000436555 524 ntBASIC12.61□□□□□ -0.39
COL6A5A8TX70 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC12.61□□□□□ -0.39
COL6A5A8TX70 SERPINA13P-202ENST00000478994 924 ntBASIC12.61□□□□□ -0.39
COL6A5A8TX70 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC12.61□□□□□ -0.39
COL6A5A8TX70 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC12.61□□□□□ -0.39
COL6A5A8TX70 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC12.61□□□□□ -0.39
COL6A5A8TX70 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC12.61□□□□□ -0.39
COL6A5A8TX70 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
COL6A5A8TX70 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC12.61□□□□□ -0.39
COL6A5A8TX70 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC12.61□□□□□ -0.39
COL6A5A8TX70 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC12.61□□□□□ -0.39
COL6A5A8TX70 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC12.61□□□□□ -0.39
COL6A5A8TX70 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC12.61□□□□□ -0.39
COL6A5A8TX70 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 AC116562.4-201ENST00000641316 2276 ntBASIC12.61□□□□□ -0.39
COL6A5A8TX70 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL6A5A8TX70 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC12.61□□□□□ -0.39
COL6A5A8TX70 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL6A5A8TX70 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 RPSAP36-202ENST00000494591 1261 ntBASIC12.6□□□□□ -0.39
COL6A5A8TX70 AC044849.1-201ENST00000519737 1188 ntBASIC12.6□□□□□ -0.39
COL6A5A8TX70 AL359711.2-201ENST00000563105 872 ntBASIC12.6□□□□□ -0.39
COL6A5A8TX70 AC141586.1-203ENST00000567242 366 ntBASIC12.6□□□□□ -0.39
COL6A5A8TX70 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 BRI3BPP1-201ENST00000594224 787 ntBASIC12.6□□□□□ -0.39
COL6A5A8TX70 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 AL049840.4-201ENST00000602422 811 ntBASIC12.6□□□□□ -0.39
COL6A5A8TX70 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL6A5A8TX70 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL6A5A8TX70 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL6A5A8TX70 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL6A5A8TX70 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL6A5A8TX70 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL6A5A8TX70 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL6A5A8TX70 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL6A5A8TX70 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL6A5A8TX70 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL6A5A8TX70 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL6A5A8TX70 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 RN7SL574P-201ENST00000581512 297 ntBASIC12.6□□□□□ -0.39
COL6A5A8TX70 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL6A5A8TX70 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL6A5A8TX70 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL6A5A8TX70 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL6A5A8TX70 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
COL6A5A8TX70 FZD10-202ENST00000539839 3282 ntBASIC12.6□□□□□ -0.39
COL6A5A8TX70 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL6A5A8TX70 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC12.59□□□□□ -0.39
COL6A5A8TX70 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms