Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 LINC01144-201ENST00000626198 1710 ntBASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 R3HDM2P2-201ENST00000401880 2116 ntBASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 LINC01238-205ENST00000567549 1107 ntBASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 MPDU1-223ENST00000582151 728 ntBASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 AC010331.1-201ENST00000611423 582 ntBASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28BQ9BUN5 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 CDC14C-201ENST00000428251 1719 ntBASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 AC079776.2-201ENST00000641154 1609 ntBASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 AC093827.2-201ENST00000512654 315 ntBASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms