Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 WASH6P-202ENST00000359512 1437 ntBASIC16.48■□□□□ 0.23
VPS35Q96QK1 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 AC011676.5-201ENST00000624864 2660 ntBASIC16.47■□□□□ 0.23
VPS35Q96QK1 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.47■□□□□ 0.23
VPS35Q96QK1 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 MIR4469-201ENST00000583919 79 ntBASIC16.47■□□□□ 0.23
VPS35Q96QK1 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 AL031731.1-201ENST00000642131 2094 ntBASIC16.47■□□□□ 0.23
VPS35Q96QK1 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS35Q96QK1 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS35Q96QK1 AGGF1P2-201ENST00000426656 2106 ntBASIC16.46■□□□□ 0.23
VPS35Q96QK1 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS35Q96QK1 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS35Q96QK1 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS35Q96QK1 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS35Q96QK1 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS35Q96QK1 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS35Q96QK1 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS35Q96QK1 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS35Q96QK1 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS35Q96QK1 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS35Q96QK1 GGT4P-201ENST00000623672 1708 ntBASIC16.46■□□□□ 0.23
VPS35Q96QK1 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS35Q96QK1 MIR1233-2-201ENST00000408138 82 ntBASIC16.46■□□□□ 0.23
VPS35Q96QK1 MIR1233-1-201ENST00000408722 82 ntBASIC16.46■□□□□ 0.23
VPS35Q96QK1 AL671277.1-201ENST00000429656 993 ntBASIC16.46■□□□□ 0.23
VPS35Q96QK1 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 CEND1P1-201ENST00000451006 455 ntBASIC16.46■□□□□ 0.23
VPS35Q96QK1 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms