Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 AL355306.1-201ENST00000415580 579 ntBASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 AL009183.1-201ENST00000603760 355 ntBASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 AL513210.1-201ENST00000629608 234 ntBASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 AC105339.1-204ENST00000636249 355 ntBASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A3BPQ9Y5P4 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.55■□□□□ 0.56
COL4A3BPQ9Y5P4 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 RNU1-129P-201ENST00000384064 167 ntBASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 AL671277.1-201ENST00000429656 993 ntBASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 AC109635.5-201ENST00000533593 962 ntBASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 U1.21-201ENST00000580816 167 ntBASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 AL031055.1-201ENST00000606362 631 ntBASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
COL4A3BPQ9Y5P4 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A3BPQ9Y5P4 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A3BPQ9Y5P4 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
COL4A3BPQ9Y5P4 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
COL4A3BPQ9Y5P4 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A3BPQ9Y5P4 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A3BPQ9Y5P4 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A3BPQ9Y5P4 TNRC18P3-201ENST00000441896 2691 ntBASIC18.53■□□□□ 0.56
COL4A3BPQ9Y5P4 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
COL4A3BPQ9Y5P4 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A3BPQ9Y5P4 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms