Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3BQ7Z3V4 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3BQ7Z3V4 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3BQ7Z3V4 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC20.62■□□□□ 0.89
UBE3BQ7Z3V4 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3BQ7Z3V4 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3BQ7Z3V4 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.62■□□□□ 0.89
UBE3BQ7Z3V4 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3BQ7Z3V4 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3BQ7Z3V4 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3BQ7Z3V4 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3BQ7Z3V4 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 AL158211.3-201ENST00000607385 239 ntBASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 AC007967.4-201ENST00000614700 386 ntBASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3BQ7Z3V4 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 HLA-A-202ENST00000376806 1854 ntBASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 BASP1P1-201ENST00000430708 665 ntBASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 RNA5SP421-201ENST00000516864 134 ntBASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
UBE3BQ7Z3V4 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 CALY-203ENST00000368558 825 ntTSL 5 BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 RNA5SP410-201ENST00000516285 106 ntBASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 NAA60-208ENST00000570819 833 ntTSL 2 BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC20.59■□□□□ 0.89
UBE3BQ7Z3V4 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms