Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.23■□□□□ 0.35
PTPN9P43378 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.23■□□□□ 0.35
PTPN9P43378 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.23■□□□□ 0.35
PTPN9P43378 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.23■□□□□ 0.35
PTPN9P43378 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.23■□□□□ 0.35
PTPN9P43378 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.23■□□□□ 0.35
PTPN9P43378 AC091812.2-201ENST00000619081 385 ntBASIC17.23■□□□□ 0.35
PTPN9P43378 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.23■□□□□ 0.35
PTPN9P43378 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
PTPN9P43378 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
PTPN9P43378 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.23■□□□□ 0.35
PTPN9P43378 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.23■□□□□ 0.35
PTPN9P43378 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.23■□□□□ 0.35
PTPN9P43378 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PTPN9P43378 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 AL139384.1-201ENST00000612143 3047 ntBASIC17.23■□□□□ 0.35
PTPN9P43378 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.23■□□□□ 0.35
PTPN9P43378 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PTPN9P43378 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.22■□□□□ 0.35
PTPN9P43378 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
PTPN9P43378 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.22■□□□□ 0.35
PTPN9P43378 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
PTPN9P43378 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
PTPN9P43378 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.22■□□□□ 0.35
PTPN9P43378 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.22■□□□□ 0.35
PTPN9P43378 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.22■□□□□ 0.35
PTPN9P43378 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.22■□□□□ 0.35
PTPN9P43378 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
PTPN9P43378 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.22■□□□□ 0.35
PTPN9P43378 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.22■□□□□ 0.35
PTPN9P43378 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.22■□□□□ 0.35
PTPN9P43378 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.22■□□□□ 0.35
PTPN9P43378 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.22■□□□□ 0.35
PTPN9P43378 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
PTPN9P43378 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
PTPN9P43378 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.22■□□□□ 0.35
PTPN9P43378 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 AC092364.2-201ENST00000596710 2692 ntBASIC17.22■□□□□ 0.35
PTPN9P43378 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.22■□□□□ 0.35
PTPN9P43378 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN9P43378 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.21■□□□□ 0.35
PTPN9P43378 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
PTPN9P43378 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
PTPN9P43378 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
PTPN9P43378 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.21■□□□□ 0.35
PTPN9P43378 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.21■□□□□ 0.35
PTPN9P43378 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.21■□□□□ 0.35
PTPN9P43378 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.21■□□□□ 0.35
PTPN9P43378 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
PTPN9P43378 AL662844.4-201ENST00000606367 2838 ntBASIC17.21■□□□□ 0.35
PTPN9P43378 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.21■□□□□ 0.35
PTPN9P43378 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms