Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
MSX2P35548 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
MSX2P35548 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC15.92■□□□□ 0.14
MSX2P35548 SPDYE13P-201ENST00000445314 798 ntBASIC15.92■□□□□ 0.14
MSX2P35548 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC15.92■□□□□ 0.14
MSX2P35548 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC15.92■□□□□ 0.14
MSX2P35548 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC15.92■□□□□ 0.14
MSX2P35548 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.92■□□□□ 0.14
MSX2P35548 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.92■□□□□ 0.14
MSX2P35548 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
MSX2P35548 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
MSX2P35548 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSX2P35548 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
MSX2P35548 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
MSX2P35548 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC15.92■□□□□ 0.14
MSX2P35548 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
MSX2P35548 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSX2P35548 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSX2P35548 AC022532.1-201ENST00000624563 1728 ntBASIC15.91■□□□□ 0.14
MSX2P35548 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSX2P35548 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
MSX2P35548 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.91■□□□□ 0.14
MSX2P35548 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
MSX2P35548 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.91■□□□□ 0.14
MSX2P35548 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
MSX2P35548 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.91■□□□□ 0.14
MSX2P35548 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
MSX2P35548 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC15.91■□□□□ 0.14
MSX2P35548 AC117947.1-201ENST00000427448 529 ntBASIC15.91■□□□□ 0.14
MSX2P35548 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC15.91■□□□□ 0.14
MSX2P35548 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.91■□□□□ 0.14
MSX2P35548 AP006294.2-201ENST00000641667 209 ntBASIC15.91■□□□□ 0.14
MSX2P35548 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.91■□□□□ 0.14
MSX2P35548 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.91■□□□□ 0.14
MSX2P35548 KRT8P49-201ENST00000604166 1432 ntBASIC15.91■□□□□ 0.14
MSX2P35548 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.91■□□□□ 0.14
MSX2P35548 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
MSX2P35548 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSX2P35548 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSX2P35548 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
MSX2P35548 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
MSX2P35548 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.91■□□□□ 0.14
MSX2P35548 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.91■□□□□ 0.14
MSX2P35548 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.91■□□□□ 0.14
MSX2P35548 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSX2P35548 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC15.91■□□□□ 0.14
MSX2P35548 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.9■□□□□ 0.14
MSX2P35548 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.9■□□□□ 0.14
MSX2P35548 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
MSX2P35548 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
MSX2P35548 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSX2P35548 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
MSX2P35548 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.9■□□□□ 0.14
MSX2P35548 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
MSX2P35548 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSX2P35548 AC112504.1-201ENST00000623415 1841 ntBASIC15.9■□□□□ 0.14
MSX2P35548 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
MSX2P35548 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
MSX2P35548 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSX2P35548 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSX2P35548 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
MSX2P35548 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.9■□□□□ 0.14
MSX2P35548 AC011840.4-201ENST00000578471 627 ntBASIC15.9■□□□□ 0.14
MSX2P35548 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSX2P35548 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSX2P35548 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSX2P35548 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.9■□□□□ 0.14
MSX2P35548 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSX2P35548 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSX2P35548 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
MSX2P35548 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
MSX2P35548 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.9■□□□□ 0.14
MSX2P35548 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSX2P35548 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
MSX2P35548 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSX2P35548 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSX2P35548 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.9■□□□□ 0.14
MSX2P35548 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms