Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
NUP88Q99567 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
NUP88Q99567 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUP88Q99567 AC124067.4-201ENST00000519691 2379 ntBASIC19.44■□□□□ 0.7
NUP88Q99567 PCDHB17P-201ENST00000539533 2393 ntBASIC19.44■□□□□ 0.7
NUP88Q99567 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUP88Q99567 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUP88Q99567 LINC00895-201ENST00000629028 1637 ntBASIC19.44■□□□□ 0.7
NUP88Q99567 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
NUP88Q99567 NARF-206ENST00000457415 1668 ntTSL 5 BASIC19.44■□□□□ 0.7
NUP88Q99567 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC19.44■□□□□ 0.7
NUP88Q99567 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NUP88Q99567 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NUP88Q99567 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.44■□□□□ 0.7
NUP88Q99567 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC19.44■□□□□ 0.7
NUP88Q99567 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC19.44■□□□□ 0.7
NUP88Q99567 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC19.44■□□□□ 0.7
NUP88Q99567 FAM86GP-201ENST00000448322 971 ntBASIC19.44■□□□□ 0.7
NUP88Q99567 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.44■□□□□ 0.7
NUP88Q99567 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
NUP88Q99567 AL390955.2-201ENST00000603032 514 ntBASIC19.44■□□□□ 0.7
NUP88Q99567 RAB34-224ENST00000636513 888 ntTSL 5 BASIC19.44■□□□□ 0.7
NUP88Q99567 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUP88Q99567 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUP88Q99567 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.44■□□□□ 0.7
NUP88Q99567 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUP88Q99567 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUP88Q99567 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.44■□□□□ 0.7
NUP88Q99567 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUP88Q99567 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC19.43■□□□□ 0.7
NUP88Q99567 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
NUP88Q99567 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
NUP88Q99567 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.43■□□□□ 0.7
NUP88Q99567 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC19.43■□□□□ 0.7
NUP88Q99567 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.43■□□□□ 0.7
NUP88Q99567 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC19.43■□□□□ 0.7
NUP88Q99567 MIR3909-201ENST00000579518 119 ntBASIC19.43■□□□□ 0.7
NUP88Q99567 AC027307.2-201ENST00000591252 911 ntBASIC19.43■□□□□ 0.7
NUP88Q99567 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC19.43■□□□□ 0.7
NUP88Q99567 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
NUP88Q99567 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC19.43■□□□□ 0.7
NUP88Q99567 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.43■□□□□ 0.7
NUP88Q99567 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC19.43■□□□□ 0.7
NUP88Q99567 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP88Q99567 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.43■□□□□ 0.7
NUP88Q99567 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC19.42■□□□□ 0.7
NUP88Q99567 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NUP88Q99567 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NUP88Q99567 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.42■□□□□ 0.7
NUP88Q99567 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NUP88Q99567 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
NUP88Q99567 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NUP88Q99567 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
NUP88Q99567 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.42■□□□□ 0.7
NUP88Q99567 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NUP88Q99567 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.42■□□□□ 0.7
NUP88Q99567 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC19.42■□□□□ 0.7
NUP88Q99567 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC19.42■□□□□ 0.7
NUP88Q99567 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC19.42■□□□□ 0.7
NUP88Q99567 AC026150.2-201ENST00000564693 1156 ntBASIC19.42■□□□□ 0.7
NUP88Q99567 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC19.42■□□□□ 0.7
NUP88Q99567 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
NUP88Q99567 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NUP88Q99567 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.42■□□□□ 0.7
NUP88Q99567 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
NUP88Q99567 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
NUP88Q99567 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NUP88Q99567 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
NUP88Q99567 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NUP88Q99567 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NUP88Q99567 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NUP88Q99567 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NUP88Q99567 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
NUP88Q99567 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
NUP88Q99567 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
NUP88Q99567 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
NUP88Q99567 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms