Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
APOEP02649 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
APOEP02649 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.45■□□□□ 0.38
APOEP02649 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
APOEP02649 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
APOEP02649 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.45■□□□□ 0.38
APOEP02649 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.45■□□□□ 0.38
APOEP02649 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.45■□□□□ 0.38
APOEP02649 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
APOEP02649 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.45■□□□□ 0.38
APOEP02649 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
APOEP02649 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
APOEP02649 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
APOEP02649 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
APOEP02649 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.45■□□□□ 0.38
APOEP02649 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
APOEP02649 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
APOEP02649 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
APOEP02649 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
APOEP02649 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
APOEP02649 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
APOEP02649 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.44■□□□□ 0.38
APOEP02649 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
APOEP02649 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
APOEP02649 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
APOEP02649 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
APOEP02649 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
APOEP02649 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.44■□□□□ 0.38
APOEP02649 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
APOEP02649 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
APOEP02649 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
APOEP02649 HMGA1P7-201ENST00000406908 502 ntBASIC17.44■□□□□ 0.38
APOEP02649 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.44■□□□□ 0.38
APOEP02649 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.44■□□□□ 0.38
APOEP02649 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.44■□□□□ 0.38
APOEP02649 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
APOEP02649 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.44■□□□□ 0.38
APOEP02649 AC010327.4-202ENST00000591484 748 ntBASIC17.44■□□□□ 0.38
APOEP02649 CYP2A7P1-201ENST00000595391 815 ntBASIC17.44■□□□□ 0.38
APOEP02649 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
APOEP02649 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
APOEP02649 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
APOEP02649 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
APOEP02649 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
APOEP02649 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.44■□□□□ 0.38
APOEP02649 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
APOEP02649 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
APOEP02649 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.44■□□□□ 0.38
APOEP02649 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
APOEP02649 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
APOEP02649 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.43■□□□□ 0.38
APOEP02649 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.43■□□□□ 0.38
APOEP02649 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
APOEP02649 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
APOEP02649 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.43■□□□□ 0.38
APOEP02649 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
APOEP02649 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
APOEP02649 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.43■□□□□ 0.38
APOEP02649 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
APOEP02649 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
APOEP02649 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
APOEP02649 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.43■□□□□ 0.38
APOEP02649 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.43■□□□□ 0.38
APOEP02649 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.43■□□□□ 0.38
APOEP02649 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
APOEP02649 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 MIR4492-201ENST00000581627 80 ntBASIC17.43■□□□□ 0.38
APOEP02649 AC013467.2-201ENST00000605472 835 ntBASIC17.43■□□□□ 0.38
APOEP02649 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
APOEP02649 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
APOEP02649 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.43■□□□□ 0.38
APOEP02649 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
APOEP02649 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 LINC00895-201ENST00000629028 1637 ntBASIC17.43■□□□□ 0.38
APOEP02649 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.43■□□□□ 0.38
APOEP02649 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
APOEP02649 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.42■□□□□ 0.38
APOEP02649 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms