Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
SDC3O75056 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.24■□□□□ 0.19
SDC3O75056 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.24■□□□□ 0.19
SDC3O75056 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.24■□□□□ 0.19
SDC3O75056 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
SDC3O75056 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.23■□□□□ 0.19
SDC3O75056 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.23■□□□□ 0.19
SDC3O75056 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SDC3O75056 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SDC3O75056 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 MRPS18AP1-201ENST00000414458 589 ntBASIC16.23■□□□□ 0.19
SDC3O75056 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.23■□□□□ 0.19
SDC3O75056 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.23■□□□□ 0.19
SDC3O75056 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.23■□□□□ 0.19
SDC3O75056 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.23■□□□□ 0.19
SDC3O75056 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.23■□□□□ 0.19
SDC3O75056 AL138828.2-201ENST00000615812 383 ntBASIC16.23■□□□□ 0.19
SDC3O75056 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.23■□□□□ 0.19
SDC3O75056 FOXO1B-201ENST00000504678 1527 ntBASIC16.23■□□□□ 0.19
SDC3O75056 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDC3O75056 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
SDC3O75056 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDC3O75056 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.22■□□□□ 0.19
SDC3O75056 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC3O75056 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
SDC3O75056 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SDC3O75056 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC3O75056 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC3O75056 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC3O75056 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC3O75056 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC3O75056 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC3O75056 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
SDC3O75056 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC3O75056 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.22■□□□□ 0.19
SDC3O75056 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.22■□□□□ 0.19
SDC3O75056 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.22■□□□□ 0.19
SDC3O75056 AP005018.1-201ENST00000525475 301 ntBASIC16.22■□□□□ 0.19
SDC3O75056 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.22■□□□□ 0.19
SDC3O75056 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDC3O75056 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.22■□□□□ 0.19
SDC3O75056 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.22■□□□□ 0.19
SDC3O75056 AC073389.1-201ENST00000595595 795 ntBASIC16.22■□□□□ 0.19
SDC3O75056 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.22■□□□□ 0.19
SDC3O75056 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.22■□□□□ 0.19
SDC3O75056 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.22■□□□□ 0.19
SDC3O75056 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SDC3O75056 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.22■□□□□ 0.19
SDC3O75056 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDC3O75056 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC3O75056 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.22■□□□□ 0.19
SDC3O75056 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.22■□□□□ 0.19
SDC3O75056 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.21■□□□□ 0.19
SDC3O75056 AC063926.2-201ENST00000623766 1308 ntBASIC16.21■□□□□ 0.19
SDC3O75056 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.21■□□□□ 0.19
SDC3O75056 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SDC3O75056 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.21■□□□□ 0.19
SDC3O75056 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.21■□□□□ 0.19
SDC3O75056 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.21■□□□□ 0.19
SDC3O75056 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.21■□□□□ 0.19
SDC3O75056 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.21■□□□□ 0.19
SDC3O75056 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.21■□□□□ 0.19
SDC3O75056 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
SDC3O75056 AC007967.4-201ENST00000614700 386 ntBASIC16.21■□□□□ 0.19
SDC3O75056 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.21■□□□□ 0.19
SDC3O75056 OR6D1P-203ENST00000641209 4860 ntBASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms