Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TCRBV3S1A0A5B6 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TCRBV3S1A0A5B6 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
TCRBV3S1A0A5B6 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.61■□□□□ 0.09
TCRBV3S1A0A5B6 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC15.61■□□□□ 0.09
TCRBV3S1A0A5B6 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
TCRBV3S1A0A5B6 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TCRBV3S1A0A5B6 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
TCRBV3S1A0A5B6 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TCRBV3S1A0A5B6 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TCRBV3S1A0A5B6 AL109954.1-202ENST00000564051 2148 ntBASIC15.61■□□□□ 0.09
TCRBV3S1A0A5B6 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TCRBV3S1A0A5B6 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TCRBV3S1A0A5B6 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TCRBV3S1A0A5B6 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 LGALS8-AS1-201ENST00000487567 1457 ntBASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 AC092919.2-201ENST00000623631 1645 ntBASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 TMBIM7P-203ENST00000641617 1718 ntBASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TCRBV3S1A0A5B6 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 LIN28AP1-201ENST00000429574 405 ntBASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 AC090616.6-201ENST00000582640 721 ntBASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 AL590326.2-201ENST00000625139 305 ntBASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 PGM5P2-202ENST00000637225 1043 ntBASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 AL590787.1-201ENST00000568856 1315 ntBASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TCRBV3S1A0A5B6 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC15.58■□□□□ 0.09
TCRBV3S1A0A5B6 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
TCRBV3S1A0A5B6 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
TCRBV3S1A0A5B6 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
TCRBV3S1A0A5B6 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
TCRBV3S1A0A5B6 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 SPDYE21P-201ENST00000413323 827 ntBASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 TSPY22P-201ENST00000427496 604 ntBASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 BX664615.1-201ENST00000443558 458 ntBASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 ATP5G1P1-201ENST00000448724 379 ntBASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 HOMER2P1-201ENST00000455653 964 ntBASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 LY6E-213ENST00000522528 606 ntTSL 3 BASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
TCRBV3S1A0A5B6 MPDU1-223ENST00000582151 728 ntBASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms