Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 AL512652.2-201ENST00000625156 1716 ntBASIC17.05■□□□□ 0.32
TDP1Q9NUW8 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 MTND6P24-201ENST00000440466 518 ntBASIC17.05■□□□□ 0.32
TDP1Q9NUW8 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 RN7SL828P-201ENST00000607615 303 ntBASIC17.05■□□□□ 0.32
TDP1Q9NUW8 AC009118.2-201ENST00000613275 655 ntBASIC17.05■□□□□ 0.32
TDP1Q9NUW8 AC139713.2-201ENST00000641328 2723 ntBASIC17.05■□□□□ 0.32
TDP1Q9NUW8 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 FZD10-202ENST00000539839 3282 ntBASIC17.05■□□□□ 0.32
TDP1Q9NUW8 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.05■□□□□ 0.32
TDP1Q9NUW8 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 CETN4P-206ENST00000642099 2168 ntBASIC17.04■□□□□ 0.32
TDP1Q9NUW8 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.04■□□□□ 0.32
TDP1Q9NUW8 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 SERBP1P5-201ENST00000510079 1181 ntBASIC17.04■□□□□ 0.32
TDP1Q9NUW8 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 AL589739.1-201ENST00000607720 493 ntBASIC17.04■□□□□ 0.32
TDP1Q9NUW8 AC020765.3-201ENST00000613051 740 ntBASIC17.04■□□□□ 0.32
TDP1Q9NUW8 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TDP1Q9NUW8 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.03■□□□□ 0.32
TDP1Q9NUW8 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms