Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AC074338.1-201ENST00000416825 156 ntBASIC27■■□□□ 1.91
IFT140Q96RY7 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC27■■□□□ 1.91
IFT140Q96RY7 AC104306.2-201ENST00000451877 341 ntBASIC27■■□□□ 1.91
IFT140Q96RY7 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC27■■□□□ 1.91
IFT140Q96RY7 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC27■■□□□ 1.91
IFT140Q96RY7 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC27■■□□□ 1.91
IFT140Q96RY7 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC27■■□□□ 1.91
IFT140Q96RY7 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC27■■□□□ 1.91
IFT140Q96RY7 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
IFT140Q96RY7 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
IFT140Q96RY7 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
IFT140Q96RY7 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC27■■□□□ 1.91
IFT140Q96RY7 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC27■■□□□ 1.91
IFT140Q96RY7 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC27■■□□□ 1.91
IFT140Q96RY7 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC27■■□□□ 1.91
IFT140Q96RY7 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
IFT140Q96RY7 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC27■■□□□ 1.91
IFT140Q96RY7 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC27■■□□□ 1.91
IFT140Q96RY7 AC138028.6-201ENST00000616106 1482 ntBASIC27■■□□□ 1.91
IFT140Q96RY7 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC27■■□□□ 1.91
IFT140Q96RY7 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC27■■□□□ 1.91
IFT140Q96RY7 CNN2P8-201ENST00000421872 913 ntBASIC27■■□□□ 1.91
IFT140Q96RY7 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC27■■□□□ 1.91
IFT140Q96RY7 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC27■■□□□ 1.91
IFT140Q96RY7 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC27■■□□□ 1.91
IFT140Q96RY7 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC27■■□□□ 1.91
IFT140Q96RY7 KLK3-211ENST00000597483 810 ntTSL 2 BASIC27■■□□□ 1.91
IFT140Q96RY7 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC27■■□□□ 1.91
IFT140Q96RY7 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC26.99■■□□□ 1.91
IFT140Q96RY7 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
IFT140Q96RY7 HARS-202ENST00000415192 1401 ntTSL 2 BASIC26.99■■□□□ 1.91
IFT140Q96RY7 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC26.99■■□□□ 1.91
IFT140Q96RY7 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
IFT140Q96RY7 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
IFT140Q96RY7 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC26.99■■□□□ 1.91
IFT140Q96RY7 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC26.99■■□□□ 1.91
IFT140Q96RY7 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
IFT140Q96RY7 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
IFT140Q96RY7 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC26.99■■□□□ 1.91
IFT140Q96RY7 AC134915.1-201ENST00000426461 574 ntBASIC26.99■■□□□ 1.91
IFT140Q96RY7 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC26.99■■□□□ 1.91
IFT140Q96RY7 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC26.99■■□□□ 1.91
IFT140Q96RY7 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC26.99■■□□□ 1.91
IFT140Q96RY7 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC26.99■■□□□ 1.91
IFT140Q96RY7 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC26.99■■□□□ 1.91
IFT140Q96RY7 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC26.98■■□□□ 1.91
IFT140Q96RY7 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
IFT140Q96RY7 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
IFT140Q96RY7 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
IFT140Q96RY7 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
IFT140Q96RY7 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
IFT140Q96RY7 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC26.98■■□□□ 1.91
IFT140Q96RY7 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
IFT140Q96RY7 RPS3-201ENST00000278572 907 ntTSL 3 BASIC26.98■■□□□ 1.91
IFT140Q96RY7 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
IFT140Q96RY7 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC26.98■■□□□ 1.91
IFT140Q96RY7 GGCT-203ENST00000409144 836 ntTSL 2 BASIC26.98■■□□□ 1.91
IFT140Q96RY7 NUS1P3-201ENST00000423502 862 ntBASIC26.98■■□□□ 1.91
IFT140Q96RY7 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC26.98■■□□□ 1.91
IFT140Q96RY7 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC26.98■■□□□ 1.91
IFT140Q96RY7 Z93015.1-201ENST00000451718 390 ntBASIC26.98■■□□□ 1.91
IFT140Q96RY7 FXR1-221ENST00000491674 365 ntTSL 2 BASIC26.98■■□□□ 1.91
IFT140Q96RY7 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC26.98■■□□□ 1.91
IFT140Q96RY7 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC26.98■■□□□ 1.91
IFT140Q96RY7 RPL8-205ENST00000527914 551 ntTSL 3 BASIC26.98■■□□□ 1.91
IFT140Q96RY7 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
IFT140Q96RY7 SPIB-207ENST00000597855 564 ntTSL 4 BASIC26.98■■□□□ 1.91
IFT140Q96RY7 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
IFT140Q96RY7 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
IFT140Q96RY7 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC26.98■■□□□ 1.91
IFT140Q96RY7 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC26.98■■□□□ 1.91
IFT140Q96RY7 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
IFT140Q96RY7 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC26.97■■□□□ 1.91
IFT140Q96RY7 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC26.97■■□□□ 1.91
IFT140Q96RY7 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
IFT140Q96RY7 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
IFT140Q96RY7 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC26.97■■□□□ 1.91
IFT140Q96RY7 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
IFT140Q96RY7 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC26.97■■□□□ 1.91
IFT140Q96RY7 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC26.97■■□□□ 1.91
IFT140Q96RY7 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC26.97■■□□□ 1.91
IFT140Q96RY7 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
IFT140Q96RY7 HINT2P1-201ENST00000419438 481 ntBASIC26.97■■□□□ 1.91
IFT140Q96RY7 AL591846.1-201ENST00000451736 433 ntBASIC26.97■■□□□ 1.91
IFT140Q96RY7 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC26.97■■□□□ 1.91
IFT140Q96RY7 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC26.97■■□□□ 1.91
IFT140Q96RY7 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
IFT140Q96RY7 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC26.97■■□□□ 1.91
IFT140Q96RY7 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC26.97■■□□□ 1.91
IFT140Q96RY7 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
IFT140Q96RY7 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC26.97■■□□□ 1.91
IFT140Q96RY7 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
IFT140Q96RY7 KRT8P37-201ENST00000451609 1420 ntBASIC26.97■■□□□ 1.91
IFT140Q96RY7 AL354751.1-201ENST00000412768 1863 ntBASIC26.97■■□□□ 1.91
IFT140Q96RY7 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
IFT140Q96RY7 KRT8P19-201ENST00000551916 1455 ntBASIC26.97■■□□□ 1.91
IFT140Q96RY7 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC26.97■■□□□ 1.91
IFT140Q96RY7 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC26.97■■□□□ 1.91
IFT140Q96RY7 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC26.97■■□□□ 1.91
IFT140Q96RY7 RELA-227ENST00000615805 2236 ntTSL 5 BASIC26.97■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms