Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 AL161645.1-201ENST00000622716 1255 ntBASIC14.98□□□□□ -0.01
CPNE4Q96A23 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CPNE4Q96A23 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CPNE4Q96A23 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
CPNE4Q96A23 AC005915.1-201ENST00000624912 2018 ntBASIC14.98□□□□□ -0.01
CPNE4Q96A23 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CPNE4Q96A23 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CPNE4Q96A23 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC14.98□□□□□ -0.01
CPNE4Q96A23 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CPNE4Q96A23 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CPNE4Q96A23 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
CPNE4Q96A23 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC14.98□□□□□ -0.01
CPNE4Q96A23 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
CPNE4Q96A23 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
CPNE4Q96A23 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 AC092919.2-201ENST00000623631 1645 ntBASIC14.97□□□□□ -0.01
CPNE4Q96A23 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 AL645728.1-201ENST00000366221 2101 ntBASIC14.97□□□□□ -0.01
CPNE4Q96A23 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 MIR1233-2-201ENST00000408138 82 ntBASIC14.97□□□□□ -0.01
CPNE4Q96A23 MIR1233-1-201ENST00000408722 82 ntBASIC14.97□□□□□ -0.01
CPNE4Q96A23 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 HTR5BP-201ENST00000430851 1154 ntBASIC14.97□□□□□ -0.01
CPNE4Q96A23 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CPNE4Q96A23 AC018695.7-201ENST00000624587 2492 ntBASIC14.97□□□□□ -0.01
CPNE4Q96A23 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.97□□□□□ -0.01
CPNE4Q96A23 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
CPNE4Q96A23 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.96□□□□□ -0.01
CPNE4Q96A23 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC14.96□□□□□ -0.01
CPNE4Q96A23 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CPNE4Q96A23 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 KRT8P39-201ENST00000396270 1433 ntBASIC14.96□□□□□ -0.01
CPNE4Q96A23 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 PC-204ENST00000524491 1714 ntTSL 2 BASIC14.96□□□□□ -0.01
CPNE4Q96A23 CD7-202ENST00000578509 925 ntTSL 3 BASIC14.96□□□□□ -0.01
CPNE4Q96A23 AL078644.1-201ENST00000609881 752 ntBASIC14.96□□□□□ -0.01
CPNE4Q96A23 CITED2-204ENST00000618718 901 ntTSL 2 BASIC14.96□□□□□ -0.01
CPNE4Q96A23 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
CPNE4Q96A23 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CPNE4Q96A23 AC068418.2-201ENST00000577309 3703 ntBASIC14.96□□□□□ -0.01
CPNE4Q96A23 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
CPNE4Q96A23 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.02
CPNE4Q96A23 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CPNE4Q96A23 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CPNE4Q96A23 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms