Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC14.51□□□□□ -0.09
COL8A1P27658 MYCLP2-201ENST00000449268 967 ntBASIC14.51□□□□□ -0.09
COL8A1P27658 AC093004.1-201ENST00000508850 424 ntBASIC14.51□□□□□ -0.09
COL8A1P27658 AC104989.1-201ENST00000519711 778 ntBASIC14.51□□□□□ -0.09
COL8A1P27658 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC14.51□□□□□ -0.09
COL8A1P27658 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC14.51□□□□□ -0.09
COL8A1P27658 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.51□□□□□ -0.09
COL8A1P27658 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC14.51□□□□□ -0.09
COL8A1P27658 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC14.51□□□□□ -0.09
COL8A1P27658 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC14.51□□□□□ -0.09
COL8A1P27658 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC14.51□□□□□ -0.09
COL8A1P27658 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC14.51□□□□□ -0.09
COL8A1P27658 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL8A1P27658 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC14.51□□□□□ -0.09
COL8A1P27658 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC14.51□□□□□ -0.09
COL8A1P27658 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL8A1P27658 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL8A1P27658 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
COL8A1P27658 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL8A1P27658 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL8A1P27658 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL8A1P27658 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL8A1P27658 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC14.5□□□□□ -0.09
COL8A1P27658 AL354751.1-201ENST00000412768 1863 ntBASIC14.5□□□□□ -0.09
COL8A1P27658 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC14.5□□□□□ -0.09
COL8A1P27658 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.5□□□□□ -0.09
COL8A1P27658 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
COL8A1P27658 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 SLC7A15P-201ENST00000424028 1363 ntBASIC14.5□□□□□ -0.09
COL8A1P27658 AL035456.1-201ENST00000456064 1369 ntBASIC14.5□□□□□ -0.09
COL8A1P27658 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
COL8A1P27658 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC14.5□□□□□ -0.09
COL8A1P27658 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
COL8A1P27658 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
COL8A1P27658 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 ELK2AP-201ENST00000392510 1007 ntBASIC14.5□□□□□ -0.09
COL8A1P27658 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
COL8A1P27658 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 AC092506.1-202ENST00000401022 528 ntBASIC14.5□□□□□ -0.09
COL8A1P27658 PP14571-201ENST00000404327 934 ntTSL 2 BASIC14.5□□□□□ -0.09
COL8A1P27658 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.5□□□□□ -0.09
COL8A1P27658 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.5□□□□□ -0.09
COL8A1P27658 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.5□□□□□ -0.09
COL8A1P27658 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.5□□□□□ -0.09
COL8A1P27658 AC105233.2-201ENST00000523697 349 ntBASIC14.5□□□□□ -0.09
COL8A1P27658 AF228730.5-201ENST00000530288 346 ntBASIC14.5□□□□□ -0.09
COL8A1P27658 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC14.5□□□□□ -0.09
COL8A1P27658 IGHV3OR16-16-201ENST00000563644 343 ntBASIC14.5□□□□□ -0.09
COL8A1P27658 AC008735.3-201ENST00000596646 500 ntBASIC14.5□□□□□ -0.09
COL8A1P27658 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
COL8A1P27658 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.5□□□□□ -0.09
COL8A1P27658 Z99916.3-201ENST00000623422 1080 ntBASIC14.5□□□□□ -0.09
COL8A1P27658 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC14.5□□□□□ -0.09
COL8A1P27658 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC14.5□□□□□ -0.09
COL8A1P27658 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 NOC2LP1-202ENST00000452600 2235 ntBASIC14.5□□□□□ -0.09
COL8A1P27658 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC14.5□□□□□ -0.09
COL8A1P27658 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.5□□□□□ -0.09
COL8A1P27658 AL353732.1-201ENST00000569618 1459 ntBASIC14.5□□□□□ -0.09
COL8A1P27658 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
COL8A1P27658 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC14.5□□□□□ -0.09
COL8A1P27658 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL8A1P27658 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.49□□□□□ -0.09
COL8A1P27658 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC14.49□□□□□ -0.09
COL8A1P27658 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC14.49□□□□□ -0.09
COL8A1P27658 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL8A1P27658 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.49□□□□□ -0.09
COL8A1P27658 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.49□□□□□ -0.09
COL8A1P27658 IFNA4-201ENST00000421715 978 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
COL8A1P27658 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC14.49□□□□□ -0.09
COL8A1P27658 AL353705.2-201ENST00000428243 662 ntBASIC14.49□□□□□ -0.09
COL8A1P27658 AC099548.2-209ENST00000480264 625 ntBASIC14.49□□□□□ -0.09
COL8A1P27658 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
COL8A1P27658 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms