Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 AL035633.1-201ENST00000406139 838 ntBASIC14.15□□□□□ -0.14
USF1P22415 KRT18P32-201ENST00000424695 1287 ntBASIC14.15□□□□□ -0.14
USF1P22415 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.15□□□□□ -0.14
USF1P22415 AC079140.1-201ENST00000508039 487 ntBASIC14.15□□□□□ -0.14
USF1P22415 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.15□□□□□ -0.14
USF1P22415 AC107918.2-201ENST00000530817 355 ntBASIC14.15□□□□□ -0.14
USF1P22415 THTPA-204ENST00000554970 569 ntTSL 4 BASIC14.15□□□□□ -0.14
USF1P22415 THTPA-206ENST00000556015 535 ntTSL 3 BASIC14.15□□□□□ -0.14
USF1P22415 RARRES2P8-201ENST00000566335 367 ntBASIC14.15□□□□□ -0.14
USF1P22415 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.15□□□□□ -0.14
USF1P22415 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.15□□□□□ -0.14
USF1P22415 AC005412.3-201ENST00000580309 715 ntBASIC14.15□□□□□ -0.14
USF1P22415 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
USF1P22415 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 Z92544.3-201ENST00000624747 417 ntBASIC14.15□□□□□ -0.14
USF1P22415 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC14.15□□□□□ -0.14
USF1P22415 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
USF1P22415 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
USF1P22415 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
USF1P22415 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
USF1P22415 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.15
USF1P22415 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.15
USF1P22415 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC14.14□□□□□ -0.15
USF1P22415 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC14.14□□□□□ -0.15
USF1P22415 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC14.14□□□□□ -0.15
USF1P22415 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC14.14□□□□□ -0.15
USF1P22415 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 AL139384.1-201ENST00000612143 3047 ntBASIC14.14□□□□□ -0.15
USF1P22415 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.14□□□□□ -0.15
USF1P22415 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
USF1P22415 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
USF1P22415 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.14□□□□□ -0.15
USF1P22415 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC14.14□□□□□ -0.15
USF1P22415 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC14.14□□□□□ -0.15
USF1P22415 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.14□□□□□ -0.15
USF1P22415 CD7-202ENST00000578509 925 ntTSL 3 BASIC14.14□□□□□ -0.15
USF1P22415 AC005498.2-205ENST00000593218 784 ntBASIC14.14□□□□□ -0.15
USF1P22415 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC14.14□□□□□ -0.15
USF1P22415 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC14.14□□□□□ -0.15
USF1P22415 AP001094.4-201ENST00000579008 2176 ntBASIC14.14□□□□□ -0.15
USF1P22415 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC14.14□□□□□ -0.15
USF1P22415 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
USF1P22415 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC14.14□□□□□ -0.15
USF1P22415 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC14.14□□□□□ -0.15
USF1P22415 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
USF1P22415 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC14.14□□□□□ -0.15
USF1P22415 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC14.14□□□□□ -0.15
USF1P22415 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 AC011270.2-201ENST00000624293 2550 ntBASIC14.14□□□□□ -0.15
USF1P22415 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC14.14□□□□□ -0.15
USF1P22415 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USF1P22415 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
USF1P22415 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
USF1P22415 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
USF1P22415 AC080080.1-201ENST00000625121 2420 ntBASIC14.13□□□□□ -0.15
USF1P22415 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
USF1P22415 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
USF1P22415 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC14.13□□□□□ -0.15
USF1P22415 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.13□□□□□ -0.15
USF1P22415 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC14.13□□□□□ -0.15
USF1P22415 AC068587.6-202ENST00000641839 5619 ntBASIC14.13□□□□□ -0.15
USF1P22415 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 COX20P2-201ENST00000452636 358 ntBASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms