Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 AL365209.1-201ENST00000624418 6473 ntBASIC12.97□□□□□ -0.33
CXCL1P09341 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CXCL1P09341 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CXCL1P09341 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CXCL1P09341 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC12.97□□□□□ -0.33
CXCL1P09341 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 AC117489.1-201ENST00000625169 3217 ntBASIC12.97□□□□□ -0.33
CXCL1P09341 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CXCL1P09341 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC12.97□□□□□ -0.33
CXCL1P09341 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 PENK-204ENST00000518770 863 ntTSL 2 BASIC12.97□□□□□ -0.33
CXCL1P09341 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC12.97□□□□□ -0.33
CXCL1P09341 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 AC136621.1-201ENST00000624017 2304 ntBASIC12.97□□□□□ -0.33
CXCL1P09341 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC12.97□□□□□ -0.33
CXCL1P09341 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC12.97□□□□□ -0.33
CXCL1P09341 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CXCL1P09341 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 SP100-205ENST00000409824 1802 ntTSL 5 BASIC12.97□□□□□ -0.33
CXCL1P09341 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC12.97□□□□□ -0.33
CXCL1P09341 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC12.97□□□□□ -0.33
CXCL1P09341 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC12.97□□□□□ -0.33
CXCL1P09341 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CXCL1P09341 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CXCL1P09341 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC12.96□□□□□ -0.33
CXCL1P09341 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CXCL1P09341 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CXCL1P09341 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
CXCL1P09341 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
CXCL1P09341 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CXCL1P09341 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
CXCL1P09341 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CXCL1P09341 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC12.96□□□□□ -0.33
CXCL1P09341 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CXCL1P09341 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.33
CXCL1P09341 AMT-206ENST00000458307 1860 ntTSL 2 BASIC12.96□□□□□ -0.33
CXCL1P09341 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CXCL1P09341 PRR31-201ENST00000371629 978 ntTSL 2 BASIC12.96□□□□□ -0.33
CXCL1P09341 GAD2-202ENST00000376248 680 ntTSL 5 BASIC12.96□□□□□ -0.33
CXCL1P09341 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CXCL1P09341 FITM1-202ENST00000559294 800 ntBASIC12.96□□□□□ -0.33
CXCL1P09341 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC12.96□□□□□ -0.33
CXCL1P09341 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC12.96□□□□□ -0.33
CXCL1P09341 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CXCL1P09341 GXYLT1P4-201ENST00000613576 1192 ntBASIC12.96□□□□□ -0.33
CXCL1P09341 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
CXCL1P09341 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC12.96□□□□□ -0.33
CXCL1P09341 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
CXCL1P09341 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
CXCL1P09341 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC12.96□□□□□ -0.33
CXCL1P09341 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CXCL1P09341 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CXCL1P09341 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CXCL1P09341 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CXCL1P09341 LINC00552-201ENST00000625151 2579 ntBASIC12.96□□□□□ -0.34
CXCL1P09341 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CXCL1P09341 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC12.96□□□□□ -0.34
CXCL1P09341 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC12.96□□□□□ -0.34
CXCL1P09341 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
CXCL1P09341 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CXCL1P09341 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CXCL1P09341 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CXCL1P09341 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC12.96□□□□□ -0.34
CXCL1P09341 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC12.96□□□□□ -0.34
CXCL1P09341 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CXCL1P09341 MECR-202ENST00000373791 2416 ntTSL 2 BASIC12.96□□□□□ -0.34
CXCL1P09341 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CXCL1P09341 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CXCL1P09341 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CXCL1P09341 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC12.95□□□□□ -0.34
CXCL1P09341 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC12.95□□□□□ -0.34
CXCL1P09341 CNTNAP3P2-201ENST00000617175 3861 ntBASIC12.95□□□□□ -0.34
CXCL1P09341 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CXCL1P09341 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC12.95□□□□□ -0.34
CXCL1P09341 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CXCL1P09341 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms