Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 RNU1-129P-201ENST00000384064 167 ntBASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 PMS2P4-201ENST00000412466 1052 ntBASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 MIR3909-201ENST00000579518 119 ntBASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 U1.21-201ENST00000580816 167 ntBASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 AL009183.1-201ENST00000603760 355 ntBASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 AL078644.1-201ENST00000609881 752 ntBASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 CICP6-201ENST00000457191 2729 ntBASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 AC105020.1-201ENST00000435356 2205 ntBASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 AC092474.2-201ENST00000424288 719 ntBASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 ALG1L5P-201ENST00000482043 771 ntBASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 YBX1P5-201ENST00000509441 847 ntBASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 AL139011.1-202ENST00000642063 584 ntBASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 AC005915.1-201ENST00000624912 2018 ntBASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 ELL2P1-201ENST00000413990 1906 ntBASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM39Q9HCM9 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 AC109635.5-201ENST00000533593 962 ntBASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms