Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.84■□□□□ 0.13
LIM2P55344 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.84■□□□□ 0.13
LIM2P55344 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
LIM2P55344 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
LIM2P55344 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
LIM2P55344 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 HLA-A-202ENST00000376806 1854 ntBASIC15.84■□□□□ 0.13
LIM2P55344 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 KRT8P39-201ENST00000396270 1433 ntBASIC15.84■□□□□ 0.13
LIM2P55344 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.84■□□□□ 0.13
LIM2P55344 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.84■□□□□ 0.13
LIM2P55344 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.13
LIM2P55344 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LIM2P55344 AC006538.1-201ENST00000567905 1585 ntBASIC15.83■□□□□ 0.13
LIM2P55344 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
LIM2P55344 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LIM2P55344 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LIM2P55344 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.83■□□□□ 0.13
LIM2P55344 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LIM2P55344 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
LIM2P55344 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIM2P55344 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIM2P55344 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
LIM2P55344 HLA-J-202ENST00000469281 1241 ntBASIC15.83■□□□□ 0.12
LIM2P55344 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.83■□□□□ 0.12
LIM2P55344 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.83■□□□□ 0.12
LIM2P55344 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.83■□□□□ 0.12
LIM2P55344 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.83■□□□□ 0.12
LIM2P55344 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIM2P55344 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
LIM2P55344 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.83■□□□□ 0.12
LIM2P55344 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIM2P55344 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.83■□□□□ 0.12
LIM2P55344 AL513190.1-201ENST00000621254 727 ntBASIC15.83■□□□□ 0.12
LIM2P55344 AC092865.6-201ENST00000642101 219 ntBASIC15.83■□□□□ 0.12
LIM2P55344 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.83■□□□□ 0.12
LIM2P55344 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIM2P55344 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
LIM2P55344 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIM2P55344 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
LIM2P55344 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIM2P55344 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
LIM2P55344 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIM2P55344 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIM2P55344 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.12
LIM2P55344 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LIM2P55344 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIM2P55344 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIM2P55344 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIM2P55344 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.82■□□□□ 0.12
LIM2P55344 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.82■□□□□ 0.12
LIM2P55344 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.82■□□□□ 0.12
LIM2P55344 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
LIM2P55344 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
LIM2P55344 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.82■□□□□ 0.12
LIM2P55344 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
LIM2P55344 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.82■□□□□ 0.12
LIM2P55344 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.82■□□□□ 0.12
LIM2P55344 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.82■□□□□ 0.12
LIM2P55344 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.82■□□□□ 0.12
LIM2P55344 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
LIM2P55344 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.82■□□□□ 0.12
LIM2P55344 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.82■□□□□ 0.12
LIM2P55344 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.82■□□□□ 0.12
LIM2P55344 PGAM5P1-201ENST00000518923 814 ntBASIC15.82■□□□□ 0.12
LIM2P55344 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.82■□□□□ 0.12
LIM2P55344 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.82■□□□□ 0.12
LIM2P55344 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
LIM2P55344 PDPK2P-202ENST00000562415 1191 ntBASIC15.82■□□□□ 0.12
LIM2P55344 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.82■□□□□ 0.12
LIM2P55344 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 LINC02199-201ENST00000506655 2702 ntBASIC15.82■□□□□ 0.12
LIM2P55344 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
LIM2P55344 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
LIM2P55344 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.82■□□□□ 0.12
LIM2P55344 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms