Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.13■□□□□ 0.01
FREM3P0C091 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.13■□□□□ 0.01
FREM3P0C091 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 FAM58DP-201ENST00000428076 619 ntBASIC15.13■□□□□ 0.01
FREM3P0C091 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.13■□□□□ 0.01
FREM3P0C091 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
FREM3P0C091 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 AP002472.1-201ENST00000577490 586 ntBASIC15.13■□□□□ 0.01
FREM3P0C091 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.13■□□□□ 0.01
FREM3P0C091 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.13■□□□□ 0.01
FREM3P0C091 AL513210.1-201ENST00000629608 234 ntBASIC15.13■□□□□ 0.01
FREM3P0C091 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FREM3P0C091 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.13■□□□□ 0.01
FREM3P0C091 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
FREM3P0C091 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.12■□□□□ 0.01
FREM3P0C091 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
FREM3P0C091 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.12■□□□□ 0.01
FREM3P0C091 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.12■□□□□ 0.01
FREM3P0C091 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FREM3P0C091 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
FREM3P0C091 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
FREM3P0C091 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
FREM3P0C091 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.12■□□□□ 0.01
FREM3P0C091 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
FREM3P0C091 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.12■□□□□ 0.01
FREM3P0C091 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
FREM3P0C091 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
FREM3P0C091 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
FREM3P0C091 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.12■□□□□ 0.01
FREM3P0C091 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.12■□□□□ 0.01
FREM3P0C091 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
FREM3P0C091 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
FREM3P0C091 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.12■□□□□ 0.01
FREM3P0C091 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.12■□□□□ 0.01
FREM3P0C091 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FREM3P0C091 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
FREM3P0C091 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
FREM3P0C091 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.12■□□□□ 0.01
FREM3P0C091 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
FREM3P0C091 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.12■□□□□ 0.01
FREM3P0C091 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.12■□□□□ 0.01
FREM3P0C091 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.12■□□□□ 0.01
FREM3P0C091 AC009093.7-201ENST00000623853 1223 ntBASIC15.12■□□□□ 0.01
FREM3P0C091 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.12■□□□□ 0.01
FREM3P0C091 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.12■□□□□ 0.01
FREM3P0C091 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FREM3P0C091 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FREM3P0C091 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.12■□□□□ 0.01
FREM3P0C091 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
FREM3P0C091 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
FREM3P0C091 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
FREM3P0C091 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FREM3P0C091 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
FREM3P0C091 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.11■□□□□ 0.01
FREM3P0C091 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC15.11■□□□□ 0.01
FREM3P0C091 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.11■□□□□ 0.01
FREM3P0C091 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.11■□□□□ 0.01
FREM3P0C091 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
FREM3P0C091 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.11■□□□□ 0.01
FREM3P0C091 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.11■□□□□ 0.01
FREM3P0C091 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.11■□□□□ 0.01
FREM3P0C091 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.11■□□□□ 0.01
FREM3P0C091 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.11■□□□□ 0.01
FREM3P0C091 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
FREM3P0C091 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
FREM3P0C091 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.11■□□□□ 0.01
FREM3P0C091 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
FREM3P0C091 FOXO1B-201ENST00000504678 1527 ntBASIC15.11■□□□□ 0.01
FREM3P0C091 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.11■□□□□ 0.01
FREM3P0C091 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
FREM3P0C091 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.11■□□□□ 0.01
FREM3P0C091 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.11■□□□□ 0.01
FREM3P0C091 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.11■□□□□ 0.01
FREM3P0C091 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 AC093520.2-201ENST00000561830 333 ntBASIC15.11■□□□□ 0.01
FREM3P0C091 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.11■□□□□ 0.01
FREM3P0C091 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FREM3P0C091 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms