Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.66■□□□□ 0.74
HMGB1P09429 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC19.66■□□□□ 0.74
HMGB1P09429 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.66■□□□□ 0.74
HMGB1P09429 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.66■□□□□ 0.74
HMGB1P09429 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.66■□□□□ 0.74
HMGB1P09429 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC19.66■□□□□ 0.74
HMGB1P09429 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC19.66■□□□□ 0.74
HMGB1P09429 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.66■□□□□ 0.74
HMGB1P09429 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.66■□□□□ 0.74
HMGB1P09429 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
HMGB1P09429 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.66■□□□□ 0.74
HMGB1P09429 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.66■□□□□ 0.74
HMGB1P09429 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
HMGB1P09429 AL121894.2-201ENST00000602977 491 ntBASIC19.66■□□□□ 0.74
HMGB1P09429 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
HMGB1P09429 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
HMGB1P09429 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.66■□□□□ 0.74
HMGB1P09429 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC19.66■□□□□ 0.74
HMGB1P09429 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.66■□□□□ 0.74
HMGB1P09429 MTHFR-217ENST00000641820 1569 ntBASIC19.66■□□□□ 0.74
HMGB1P09429 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
HMGB1P09429 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.65■□□□□ 0.74
HMGB1P09429 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB1P09429 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB1P09429 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB1P09429 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB1P09429 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB1P09429 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HMGB1P09429 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB1P09429 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HMGB1P09429 AL590627.1-203ENST00000421194 1026 ntBASIC19.65■□□□□ 0.74
HMGB1P09429 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.65■□□□□ 0.74
HMGB1P09429 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC19.65■□□□□ 0.74
HMGB1P09429 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.65■□□□□ 0.74
HMGB1P09429 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
HMGB1P09429 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.65■□□□□ 0.74
HMGB1P09429 THTPA-204ENST00000554970 569 ntTSL 4 BASIC19.65■□□□□ 0.74
HMGB1P09429 THTPA-206ENST00000556015 535 ntTSL 3 BASIC19.65■□□□□ 0.74
HMGB1P09429 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC19.65■□□□□ 0.74
HMGB1P09429 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGB1P09429 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.65■□□□□ 0.74
HMGB1P09429 AC064836.3-201ENST00000607928 673 ntBASIC19.65■□□□□ 0.74
HMGB1P09429 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGB1P09429 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.65■□□□□ 0.74
HMGB1P09429 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC19.65■□□□□ 0.74
HMGB1P09429 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB1P09429 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGB1P09429 ZNF259P1-201ENST00000407656 1365 ntBASIC19.65■□□□□ 0.74
HMGB1P09429 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGB1P09429 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGB1P09429 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGB1P09429 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HMGB1P09429 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB1P09429 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
HMGB1P09429 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB1P09429 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HMGB1P09429 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
HMGB1P09429 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HMGB1P09429 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HMGB1P09429 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.64■□□□□ 0.74
HMGB1P09429 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.64■□□□□ 0.74
HMGB1P09429 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HMGB1P09429 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB1P09429 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB1P09429 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB1P09429 DPM2-202ENST00000373110 738 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGB1P09429 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB1P09429 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGB1P09429 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.64■□□□□ 0.73
HMGB1P09429 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGB1P09429 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.64■□□□□ 0.73
HMGB1P09429 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.64■□□□□ 0.73
HMGB1P09429 AC109635.5-201ENST00000533593 962 ntBASIC19.64■□□□□ 0.73
HMGB1P09429 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
HMGB1P09429 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGB1P09429 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.64■□□□□ 0.73
HMGB1P09429 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB1P09429 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB1P09429 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB1P09429 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB1P09429 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGB1P09429 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB1P09429 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.64■□□□□ 0.73
HMGB1P09429 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 379.2 ms