Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA3P55318 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA3P55318 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC17.81■□□□□ 0.44
FOXA3P55318 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC17.81■□□□□ 0.44
FOXA3P55318 CALM3-209ENST00000597743 577 ntTSL 4 BASIC17.81■□□□□ 0.44
FOXA3P55318 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC17.81■□□□□ 0.44
FOXA3P55318 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA3P55318 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA3P55318 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA3P55318 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA3P55318 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC17.8■□□□□ 0.44
FOXA3P55318 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA3P55318 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA3P55318 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
FOXA3P55318 MIR6090-201ENST00000622481 60 ntBASIC17.8■□□□□ 0.44
FOXA3P55318 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA3P55318 CLDN5-201ENST00000403084 2357 ntBASIC17.8■□□□□ 0.44
FOXA3P55318 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA3P55318 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA3P55318 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
FOXA3P55318 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC17.79■□□□□ 0.44
FOXA3P55318 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC17.79■□□□□ 0.44
FOXA3P55318 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA3P55318 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC17.79■□□□□ 0.44
FOXA3P55318 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
FOXA3P55318 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA3P55318 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA3P55318 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA3P55318 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA3P55318 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
FOXA3P55318 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA3P55318 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA3P55318 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA3P55318 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA3P55318 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA3P55318 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA3P55318 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA3P55318 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA3P55318 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA3P55318 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
FOXA3P55318 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA3P55318 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
FOXA3P55318 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC17.77■□□□□ 0.44
FOXA3P55318 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
FOXA3P55318 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC17.77■□□□□ 0.44
FOXA3P55318 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
FOXA3P55318 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
FOXA3P55318 AC141586.4-201ENST00000624558 1573 ntBASIC17.77■□□□□ 0.44
FOXA3P55318 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC17.77■□□□□ 0.44
FOXA3P55318 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
FOXA3P55318 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA3P55318 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA3P55318 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA3P55318 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA3P55318 AC097358.2-201ENST00000607541 1159 ntBASIC17.76■□□□□ 0.43
FOXA3P55318 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC17.76■□□□□ 0.43
FOXA3P55318 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.75■□□□□ 0.43
FOXA3P55318 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC17.75■□□□□ 0.43
FOXA3P55318 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA3P55318 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA3P55318 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA3P55318 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA3P55318 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA3P55318 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA3P55318 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA3P55318 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA3P55318 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA3P55318 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA3P55318 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA3P55318 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA3P55318 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA3P55318 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA3P55318 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA3P55318 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC17.74■□□□□ 0.43
FOXA3P55318 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA3P55318 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA3P55318 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA3P55318 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA3P55318 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC17.73■□□□□ 0.43
FOXA3P55318 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA3P55318 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
FOXA3P55318 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA3P55318 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
FOXA3P55318 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
FOXA3P55318 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC17.72■□□□□ 0.43
FOXA3P55318 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA3P55318 DUSP8P5-201ENST00000422884 1815 ntBASIC17.72■□□□□ 0.43
FOXA3P55318 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA3P55318 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA3P55318 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA3P55318 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA3P55318 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA3P55318 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC17.72■□□□□ 0.43
FOXA3P55318 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA3P55318 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC17.72■□□□□ 0.43
FOXA3P55318 AC005559.1-201ENST00000589661 871 ntBASIC17.72■□□□□ 0.43
FOXA3P55318 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA3P55318 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA3P55318 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA3P55318 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms