Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
SCN1AP35498 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC25.7■■□□□ 1.71
SCN1AP35498 AC074183.2-201ENST00000623112 922 ntBASIC25.7■■□□□ 1.7
SCN1AP35498 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC25.7■■□□□ 1.7
SCN1AP35498 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
SCN1AP35498 KRT18P10-201ENST00000388836 1287 ntBASIC25.7■■□□□ 1.7
SCN1AP35498 BHLHE23-202ENST00000612929 1109 ntBASIC25.7■■□□□ 1.7
SCN1AP35498 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
SCN1AP35498 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SCN1AP35498 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC25.69■■□□□ 1.7
SCN1AP35498 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC25.69■■□□□ 1.7
SCN1AP35498 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SCN1AP35498 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC25.69■■□□□ 1.7
SCN1AP35498 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.69■■□□□ 1.7
SCN1AP35498 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SCN1AP35498 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25.69■■□□□ 1.7
SCN1AP35498 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC25.69■■□□□ 1.7
SCN1AP35498 AL451085.2-201ENST00000605085 799 ntBASIC25.69■■□□□ 1.7
SCN1AP35498 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SCN1AP35498 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
SCN1AP35498 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
SCN1AP35498 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
SCN1AP35498 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SCN1AP35498 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
SCN1AP35498 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
SCN1AP35498 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SCN1AP35498 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
SCN1AP35498 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SCN1AP35498 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
SCN1AP35498 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC25.66■■□□□ 1.7
SCN1AP35498 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SCN1AP35498 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC25.66■■□□□ 1.7
SCN1AP35498 KRT8P33-201ENST00000508125 1423 ntBASIC25.66■■□□□ 1.7
SCN1AP35498 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC25.66■■□□□ 1.7
SCN1AP35498 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
SCN1AP35498 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SCN1AP35498 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC25.66■■□□□ 1.7
SCN1AP35498 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SCN1AP35498 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
SCN1AP35498 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC25.65■■□□□ 1.7
SCN1AP35498 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SCN1AP35498 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SCN1AP35498 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC25.64■■□□□ 1.7
SCN1AP35498 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC25.64■■□□□ 1.7
SCN1AP35498 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC25.64■■□□□ 1.7
SCN1AP35498 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
SCN1AP35498 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
SCN1AP35498 AC103834.1-201ENST00000520383 144 ntBASIC25.64■■□□□ 1.69
SCN1AP35498 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC25.64■■□□□ 1.69
SCN1AP35498 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
SCN1AP35498 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC25.63■■□□□ 1.69
SCN1AP35498 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC25.63■■□□□ 1.69
SCN1AP35498 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SCN1AP35498 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SCN1AP35498 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SCN1AP35498 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SCN1AP35498 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC25.62■■□□□ 1.69
SCN1AP35498 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
SCN1AP35498 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC25.62■■□□□ 1.69
SCN1AP35498 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC25.61■■□□□ 1.69
SCN1AP35498 AC019171.1-201ENST00000601251 1056 ntBASIC25.61■■□□□ 1.69
SCN1AP35498 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC25.61■■□□□ 1.69
SCN1AP35498 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SCN1AP35498 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SCN1AP35498 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC25.6■■□□□ 1.69
SCN1AP35498 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC25.6■■□□□ 1.69
SCN1AP35498 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
SCN1AP35498 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SCN1AP35498 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SCN1AP35498 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.6■■□□□ 1.69
SCN1AP35498 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
SCN1AP35498 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
SCN1AP35498 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
SCN1AP35498 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC25.59■■□□□ 1.69
SCN1AP35498 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC25.59■■□□□ 1.69
SCN1AP35498 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
SCN1AP35498 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SCN1AP35498 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SCN1AP35498 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SCN1AP35498 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC25.59■■□□□ 1.69
SCN1AP35498 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SCN1AP35498 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC25.58■■□□□ 1.69
SCN1AP35498 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SCN1AP35498 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC25.58■■□□□ 1.68
SCN1AP35498 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SCN1AP35498 AC009299.2-201ENST00000482477 511 ntBASIC25.57■■□□□ 1.68
SCN1AP35498 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
SCN1AP35498 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC25.57■■□□□ 1.68
SCN1AP35498 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SCN1AP35498 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC25.57■■□□□ 1.68
SCN1AP35498 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SCN1AP35498 AC097639.1-201ENST00000565519 1891 ntBASIC25.56■■□□□ 1.68
SCN1AP35498 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SCN1AP35498 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.56■■□□□ 1.68
SCN1AP35498 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC25.56■■□□□ 1.68
SCN1AP35498 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC25.55■■□□□ 1.68
SCN1AP35498 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SCN1AP35498 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SCN1AP35498 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SCN1AP35498 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC25.55■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms