Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.72■□□□□ 0.43
USP41Q3LFD5 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 RARRES2P9-201ENST00000565168 469 ntBASIC17.72■□□□□ 0.43
USP41Q3LFD5 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.72■□□□□ 0.43
USP41Q3LFD5 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.72■□□□□ 0.43
USP41Q3LFD5 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.72■□□□□ 0.43
USP41Q3LFD5 AC018529.1-201ENST00000613063 361 ntBASIC17.72■□□□□ 0.43
USP41Q3LFD5 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.72■□□□□ 0.43
USP41Q3LFD5 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
USP41Q3LFD5 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.72■□□□□ 0.43
USP41Q3LFD5 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.72■□□□□ 0.43
USP41Q3LFD5 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
USP41Q3LFD5 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP41Q3LFD5 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP41Q3LFD5 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.71■□□□□ 0.43
USP41Q3LFD5 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP41Q3LFD5 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP41Q3LFD5 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP41Q3LFD5 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP41Q3LFD5 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP41Q3LFD5 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.71■□□□□ 0.43
USP41Q3LFD5 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
USP41Q3LFD5 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP41Q3LFD5 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
USP41Q3LFD5 AP3S2-216ENST00000617003 1561 ntBASIC17.71■□□□□ 0.43
USP41Q3LFD5 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.71■□□□□ 0.43
USP41Q3LFD5 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.71■□□□□ 0.43
USP41Q3LFD5 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
USP41Q3LFD5 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP41Q3LFD5 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.71■□□□□ 0.43
USP41Q3LFD5 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP41Q3LFD5 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.71■□□□□ 0.43
USP41Q3LFD5 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP41Q3LFD5 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.71■□□□□ 0.43
USP41Q3LFD5 AC190387.1-201ENST00000551683 408 ntBASIC17.71■□□□□ 0.43
USP41Q3LFD5 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP41Q3LFD5 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP41Q3LFD5 AC013467.2-201ENST00000605472 835 ntBASIC17.71■□□□□ 0.43
USP41Q3LFD5 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.71■□□□□ 0.43
USP41Q3LFD5 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP41Q3LFD5 AC006277.1-201ENST00000624348 1610 ntBASIC17.71■□□□□ 0.43
USP41Q3LFD5 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.71■□□□□ 0.43
USP41Q3LFD5 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP41Q3LFD5 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP41Q3LFD5 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.71■□□□□ 0.43
USP41Q3LFD5 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
USP41Q3LFD5 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
USP41Q3LFD5 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
USP41Q3LFD5 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
USP41Q3LFD5 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.71■□□□□ 0.42
USP41Q3LFD5 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 AC236430.1-201ENST00000402231 743 ntBASIC17.7■□□□□ 0.42
USP41Q3LFD5 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 AC002472.2-201ENST00000442739 958 ntBASIC17.7■□□□□ 0.42
USP41Q3LFD5 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 TERF1P3-201ENST00000505638 1227 ntBASIC17.7■□□□□ 0.42
USP41Q3LFD5 PRYP6-201ENST00000514804 343 ntBASIC17.7■□□□□ 0.42
USP41Q3LFD5 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 RN7SL204P-201ENST00000582831 262 ntBASIC17.7■□□□□ 0.42
USP41Q3LFD5 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 AC092053.1-201ENST00000605787 1936 ntBASIC17.7■□□□□ 0.42
USP41Q3LFD5 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 AL645608.8-201ENST00000606034 2086 ntBASIC17.7■□□□□ 0.42
USP41Q3LFD5 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.7■□□□□ 0.42
USP41Q3LFD5 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP41Q3LFD5 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms