Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
RNF4P78317 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.47■□□□□ 0.07
RNF4P78317 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.47■□□□□ 0.07
RNF4P78317 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.47■□□□□ 0.07
RNF4P78317 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.47■□□□□ 0.07
RNF4P78317 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
RNF4P78317 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.47■□□□□ 0.07
RNF4P78317 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.47■□□□□ 0.07
RNF4P78317 AC021097.1-201ENST00000607902 574 ntBASIC15.47■□□□□ 0.07
RNF4P78317 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.47■□□□□ 0.07
RNF4P78317 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
RNF4P78317 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
RNF4P78317 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
RNF4P78317 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.47■□□□□ 0.07
RNF4P78317 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 AC022211.2-201ENST00000585075 2527 ntBASIC15.47■□□□□ 0.07
RNF4P78317 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
RNF4P78317 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
RNF4P78317 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
RNF4P78317 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
RNF4P78317 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
RNF4P78317 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
RNF4P78317 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
RNF4P78317 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
RNF4P78317 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
RNF4P78317 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
RNF4P78317 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.46■□□□□ 0.07
RNF4P78317 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 AL355306.1-201ENST00000415580 579 ntBASIC15.46■□□□□ 0.07
RNF4P78317 AL671277.1-201ENST00000429656 993 ntBASIC15.46■□□□□ 0.07
RNF4P78317 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
RNF4P78317 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.46■□□□□ 0.07
RNF4P78317 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.46■□□□□ 0.07
RNF4P78317 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.46■□□□□ 0.07
RNF4P78317 FAM86C2P-203ENST00000528684 1004 ntBASIC15.46■□□□□ 0.07
RNF4P78317 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.46■□□□□ 0.07
RNF4P78317 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.46■□□□□ 0.07
RNF4P78317 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
RNF4P78317 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.46■□□□□ 0.07
RNF4P78317 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
RNF4P78317 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.46■□□□□ 0.07
RNF4P78317 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
RNF4P78317 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
RNF4P78317 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
RNF4P78317 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
RNF4P78317 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
RNF4P78317 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.06
RNF4P78317 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
RNF4P78317 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
RNF4P78317 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.46■□□□□ 0.06
RNF4P78317 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
RNF4P78317 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
RNF4P78317 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.45■□□□□ 0.06
RNF4P78317 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
RNF4P78317 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.45■□□□□ 0.06
RNF4P78317 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
RNF4P78317 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RNF4P78317 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RNF4P78317 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
RNF4P78317 AL603756.1-201ENST00000606511 2163 ntBASIC15.45■□□□□ 0.06
RNF4P78317 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
RNF4P78317 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RNF4P78317 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.45■□□□□ 0.06
RNF4P78317 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
RNF4P78317 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RNF4P78317 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
RNF4P78317 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
RNF4P78317 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.45■□□□□ 0.06
RNF4P78317 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
RNF4P78317 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RNF4P78317 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
RNF4P78317 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RNF4P78317 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms