Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A4P53420 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
COL4A4P53420 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC17.61■□□□□ 0.41
COL4A4P53420 AC098850.1-201ENST00000419919 790 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
COL4A4P53420 AC007389.4-201ENST00000454674 793 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.61■□□□□ 0.41
COL4A4P53420 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC17.61■□□□□ 0.41
COL4A4P53420 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17.61■□□□□ 0.41
COL4A4P53420 USB1-203ENST00000539737 1212 ntTSL 2 BASIC17.61■□□□□ 0.41
COL4A4P53420 AC023310.3-201ENST00000557027 670 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 AC044860.1-202ENST00000559481 777 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 AC100756.1-201ENST00000562736 682 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 AC138749.3-201ENST00000567691 622 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.61■□□□□ 0.41
COL4A4P53420 AL512343.1-201ENST00000605837 169 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 AC116165.1-201ENST00000611806 668 ntBASIC17.61■□□□□ 0.41
COL4A4P53420 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A4P53420 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.6■□□□□ 0.41
COL4A4P53420 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A4P53420 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A4P53420 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A4P53420 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.6■□□□□ 0.41
COL4A4P53420 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A4P53420 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
COL4A4P53420 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
COL4A4P53420 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC17.6■□□□□ 0.41
COL4A4P53420 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A4P53420 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A4P53420 PCDHB17P-201ENST00000539533 2393 ntBASIC17.6■□□□□ 0.41
COL4A4P53420 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A4P53420 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A4P53420 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A4P53420 AC004945.1-201ENST00000416738 983 ntBASIC17.6■□□□□ 0.41
COL4A4P53420 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A4P53420 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.6■□□□□ 0.41
COL4A4P53420 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC17.6■□□□□ 0.41
COL4A4P53420 AC105021.1-202ENST00000570572 669 ntBASIC17.6■□□□□ 0.41
COL4A4P53420 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A4P53420 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A4P53420 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A4P53420 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A4P53420 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A4P53420 AC020916.1-201ENST00000587762 1774 ntBASIC17.6■□□□□ 0.41
COL4A4P53420 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
COL4A4P53420 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A4P53420 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.59■□□□□ 0.41
COL4A4P53420 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.59■□□□□ 0.41
COL4A4P53420 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A4P53420 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.59■□□□□ 0.41
COL4A4P53420 AC099548.2-209ENST00000480264 625 ntBASIC17.59■□□□□ 0.41
COL4A4P53420 DOC2GP-202ENST00000514950 1163 ntBASIC17.59■□□□□ 0.41
COL4A4P53420 TPRX2P-201ENST00000535362 881 ntBASIC17.59■□□□□ 0.41
COL4A4P53420 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
COL4A4P53420 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.59■□□□□ 0.41
COL4A4P53420 AC084346.2-201ENST00000607097 949 ntBASIC17.59■□□□□ 0.41
COL4A4P53420 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
COL4A4P53420 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A4P53420 AL133338.1-201ENST00000565695 1517 ntBASIC17.59■□□□□ 0.41
COL4A4P53420 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A4P53420 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A4P53420 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A4P53420 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.59■□□□□ 0.41
COL4A4P53420 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.59■□□□□ 0.41
COL4A4P53420 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A4P53420 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
COL4A4P53420 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
COL4A4P53420 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.59■□□□□ 0.41
COL4A4P53420 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A4P53420 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A4P53420 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A4P53420 AC080080.1-201ENST00000625121 2420 ntBASIC17.59■□□□□ 0.41
COL4A4P53420 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.59■□□□□ 0.41
COL4A4P53420 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A4P53420 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL4A4P53420 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL4A4P53420 AC005915.1-201ENST00000624912 2018 ntBASIC17.58■□□□□ 0.41
COL4A4P53420 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.58■□□□□ 0.41
COL4A4P53420 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL4A4P53420 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.58■□□□□ 0.41
COL4A4P53420 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC17.58■□□□□ 0.41
COL4A4P53420 ELK1P1-201ENST00000485699 580 ntBASIC17.58■□□□□ 0.41
COL4A4P53420 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.58■□□□□ 0.41
COL4A4P53420 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.58■□□□□ 0.41
COL4A4P53420 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.58■□□□□ 0.41
COL4A4P53420 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.41
COL4A4P53420 AP001350.2-201ENST00000625104 1094 ntBASIC17.58■□□□□ 0.41
COL4A4P53420 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
COL4A4P53420 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.58■□□□□ 0.41
COL4A4P53420 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL4A4P53420 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL4A4P53420 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL4A4P53420 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL4A4P53420 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL4A4P53420 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A4P53420 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.58■□□□□ 0.4
COL4A4P53420 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.58■□□□□ 0.4
COL4A4P53420 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.58■□□□□ 0.4
COL4A4P53420 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A4P53420 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms