Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC11O43248 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
HOXC11O43248 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.93■□□□□ 0.3
HOXC11O43248 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 AL391256.1-201ENST00000443260 1855 ntBASIC16.93■□□□□ 0.3
HOXC11O43248 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.93■□□□□ 0.3
HOXC11O43248 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.93■□□□□ 0.3
HOXC11O43248 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.93■□□□□ 0.3
HOXC11O43248 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 COX20P2-201ENST00000452636 358 ntBASIC16.93■□□□□ 0.3
HOXC11O43248 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 AC098859.1-201ENST00000502915 1238 ntBASIC16.93■□□□□ 0.3
HOXC11O43248 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.93■□□□□ 0.3
HOXC11O43248 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.93■□□□□ 0.3
HOXC11O43248 SPTSSB-204ENST00000617024 1292 ntBASIC16.93■□□□□ 0.3
HOXC11O43248 AC073592.8-201ENST00000624126 511 ntBASIC16.93■□□□□ 0.3
HOXC11O43248 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.93■□□□□ 0.3
HOXC11O43248 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.93■□□□□ 0.3
HOXC11O43248 HCG11-201ENST00000411553 5696 ntBASIC16.93■□□□□ 0.3
HOXC11O43248 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HOXC11O43248 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.93■□□□□ 0.3
HOXC11O43248 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.93■□□□□ 0.3
HOXC11O43248 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC11O43248 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
HOXC11O43248 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC11O43248 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC11O43248 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC11O43248 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
HOXC11O43248 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC11O43248 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.92■□□□□ 0.3
HOXC11O43248 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC11O43248 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC11O43248 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.92■□□□□ 0.3
HOXC11O43248 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.92■□□□□ 0.3
HOXC11O43248 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC11O43248 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
HOXC11O43248 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.92■□□□□ 0.3
HOXC11O43248 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.92■□□□□ 0.3
HOXC11O43248 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.92■□□□□ 0.3
HOXC11O43248 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.92■□□□□ 0.3
HOXC11O43248 FAM207CP-201ENST00000443486 507 ntBASIC16.92■□□□□ 0.3
HOXC11O43248 TSPY16P-201ENST00000449843 468 ntBASIC16.92■□□□□ 0.3
HOXC11O43248 UGT1A2P-201ENST00000454886 866 ntBASIC16.92■□□□□ 0.3
HOXC11O43248 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HOXC11O43248 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.92■□□□□ 0.3
HOXC11O43248 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC11O43248 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.92■□□□□ 0.3
HOXC11O43248 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.92■□□□□ 0.3
HOXC11O43248 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.92■□□□□ 0.3
HOXC11O43248 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC11O43248 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.92■□□□□ 0.3
HOXC11O43248 AC003101.2-201ENST00000612557 442 ntBASIC16.92■□□□□ 0.3
HOXC11O43248 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.92■□□□□ 0.3
HOXC11O43248 AL391005.1-201ENST00000623953 2435 ntBASIC16.92■□□□□ 0.3
HOXC11O43248 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC11O43248 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
HOXC11O43248 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
HOXC11O43248 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
HOXC11O43248 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.92■□□□□ 0.3
HOXC11O43248 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.92■□□□□ 0.3
HOXC11O43248 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC11O43248 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.92■□□□□ 0.3
HOXC11O43248 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.92■□□□□ 0.3
HOXC11O43248 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
HOXC11O43248 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC11O43248 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HOXC11O43248 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC11O43248 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC11O43248 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.92■□□□□ 0.3
HOXC11O43248 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.92■□□□□ 0.3
HOXC11O43248 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXC11O43248 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.91■□□□□ 0.3
HOXC11O43248 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HOXC11O43248 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC11O43248 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.91■□□□□ 0.3
HOXC11O43248 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC11O43248 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.91■□□□□ 0.3
HOXC11O43248 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC11O43248 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
HOXC11O43248 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC11O43248 AC008894.3-201ENST00000624324 3103 ntBASIC16.91■□□□□ 0.3
HOXC11O43248 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
HOXC11O43248 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HOXC11O43248 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.91■□□□□ 0.3
HOXC11O43248 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms