Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.94■□□□□ 0.46
CNTN3Q9P232 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.94■□□□□ 0.46
CNTN3Q9P232 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.94■□□□□ 0.46
CNTN3Q9P232 AC073389.1-201ENST00000595595 795 ntBASIC17.94■□□□□ 0.46
CNTN3Q9P232 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.94■□□□□ 0.46
CNTN3Q9P232 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.94■□□□□ 0.46
CNTN3Q9P232 AC106820.2-201ENST00000563775 3264 ntBASIC17.94■□□□□ 0.46
CNTN3Q9P232 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.94■□□□□ 0.46
CNTN3Q9P232 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CNTN3Q9P232 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CNTN3Q9P232 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CNTN3Q9P232 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CNTN3Q9P232 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.94■□□□□ 0.46
CNTN3Q9P232 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
CNTN3Q9P232 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
CNTN3Q9P232 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CNTN3Q9P232 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.94■□□□□ 0.46
CNTN3Q9P232 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CNTN3Q9P232 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CNTN3Q9P232 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CNTN3Q9P232 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.94■□□□□ 0.46
CNTN3Q9P232 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CNTN3Q9P232 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.94■□□□□ 0.46
CNTN3Q9P232 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CNTN3Q9P232 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 UXT-AS1-201ENST00000590504 1525 ntBASIC17.93■□□□□ 0.46
CNTN3Q9P232 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CNTN3Q9P232 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
CNTN3Q9P232 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.93■□□□□ 0.46
CNTN3Q9P232 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.93■□□□□ 0.46
CNTN3Q9P232 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CNTN3Q9P232 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.93■□□□□ 0.46
CNTN3Q9P232 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.93■□□□□ 0.46
CNTN3Q9P232 SLC25A39P2-201ENST00000537614 270 ntBASIC17.93■□□□□ 0.46
CNTN3Q9P232 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CNTN3Q9P232 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.93■□□□□ 0.46
CNTN3Q9P232 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.93■□□□□ 0.46
CNTN3Q9P232 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.93■□□□□ 0.46
CNTN3Q9P232 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.93■□□□□ 0.46
CNTN3Q9P232 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CNTN3Q9P232 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CNTN3Q9P232 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CNTN3Q9P232 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CNTN3Q9P232 AL603756.1-201ENST00000606511 2163 ntBASIC17.93■□□□□ 0.46
CNTN3Q9P232 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CNTN3Q9P232 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CNTN3Q9P232 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CNTN3Q9P232 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CNTN3Q9P232 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CNTN3Q9P232 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CNTN3Q9P232 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CNTN3Q9P232 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CNTN3Q9P232 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CNTN3Q9P232 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CNTN3Q9P232 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 HLA-J-202ENST00000469281 1241 ntBASIC17.92■□□□□ 0.46
CNTN3Q9P232 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 AL512356.2-201ENST00000546955 174 ntBASIC17.92■□□□□ 0.46
CNTN3Q9P232 AC025678.2-201ENST00000562061 970 ntBASIC17.92■□□□□ 0.46
CNTN3Q9P232 AC004449.1-201ENST00000564240 433 ntBASIC17.92■□□□□ 0.46
CNTN3Q9P232 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CNTN3Q9P232 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CNTN3Q9P232 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CNTN3Q9P232 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CNTN3Q9P232 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CNTN3Q9P232 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.92■□□□□ 0.46
CNTN3Q9P232 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CNTN3Q9P232 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms