Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 KRT43P-201ENST00000434019 910 ntBASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 IGHV3OR16-16-201ENST00000563644 343 ntBASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 AC116353.5-201ENST00000638148 1699 ntBASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC19.77■□□□□ 0.76
ZNF541Q9H0D2 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.75
ZNF541Q9H0D2 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 AC233724.13-201ENST00000598383 410 ntBASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 NEFHP1-201ENST00000412845 2629 ntBASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 AL355994.2-201ENST00000447882 704 ntBASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 TPI1-206ENST00000488464 791 ntTSL 5 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 MIR6069-201ENST00000620069 79 ntBASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF541Q9H0D2 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 SNX33P1-201ENST00000592116 1762 ntBASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 HLA-DPB2-205ENST00000435074 1188 ntBASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF541Q9H0D2 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms